Abstract
Bacterial genomes are highly plastic and evolve rapidly by acquiring new genetic information through horizontal gene transfer mechanisms. Capturing DNA transfer by conjugation between bacterial cells in real time is relevant to address bacterial genomes’ dynamic architecture comprehensively. Here, we describe a method allowing the direct visualization of bacterial conjugation in live cells, including the fluorescent labeling of the conjugative pilus and the monitoring of plasmid DNA transfer from donor to recipient cells.
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References
Grohmann E, Muth G, Espinosa M (2003) Conjugative plasmid transfer in gram-positive bacteria. Microbiol Mol Biol Rev 67:277–301, table of contents
Cruz FDL, Frost LS, Meyer RJ et al (2010) Conjugative DNA metabolism in Gram-negative bacteria. FEMS Microbiol Rev 34:18–40
Lederberg J, Tatum EL (1946) Gene recombination in Escherichia coli. Nature 158:558
Virolle C, Goldlust K, Djermoun S et al (2020) Plasmid transfer by conjugation in gram-negative bacteria: from the cellular to the community level. Genes (Basel) 11:1239
Lawrence JG (1999) Gene transfer, speciation, and the evolution of bacterial genomes. Curr Opin Microbiol 2:519–523
Ochman H, Lawrence JG, Groisman EA (2000) Lateral gene transfer and the nature of bacterial innovation. Nature 405:299–304
Lesterlin C, Duabrry N (2016) Investigating bacterial chromosome architecture. In: Leake MC (ed) Chromosome architecture. Springer, New York, pp 61–72
Turner L, Zhang R, Darnton NC et al (2010) Visualization of flagella during bacterial swarming. J Bacteriol 192:3259–3267
Turner L, Stern AS, Berg HC (2012) Growth of flagellar filaments of Escherichia coli is independent of filament length. J Bacteriol 194:2437–2442
Ellison CK, Dalia TN, Vidal Ceballos A et al (2018) Retraction of DNA-bound type IV competence pili initiates DNA uptake during natural transformation in vibrio cholerae. Nat Microbiol 3:773–780
Ellison CK, Dalia TN, Dalia AB et al (2019) Real-time microscopy and physical perturbation of bacterial pili using maleimide-conjugated molecules. Nat Protoc 14:1803–1819
Mercier R, Bautista S, Delannoy M et al (2020) The polar Ras-like GTPase MglA activates type IV pilus via SgmX to enable twitching motility in Myxococcus xanthus. Proc Natl Acad Sci U S A 117:28,366–28,373
Ellison CK, Kan J, Chlebek JL et al (2019) A bifunctional ATPase drives tad pilus extension and retraction. Sci Adv 5:eaay2591
Sangermani M, Hug I, Sauter N et al (2019) Tad pili play a dynamic role in Caulobacter crescentus surface colonization. mBio:10, e01237
Reyes-Lamothe R, Possoz C, Danilova O et al (2008) Independent positioning and action of Escherichia coli replisomes in live cells. Cell 133:90–102
Reyes-Lamothe R, Sherratt DJ, Leake MC (2010) Stoichiometry and architecture of active DNA replication machinery in Escherichia coli. Science 328:498–501
Nolivos S, Cayron J, Dedieu A et al (2019) Role of AcrAB-TolC multidrug efflux pump in drug-resistance acquisition by plasmid transfer. Science 364:778–782
Schindelin J, Arganda-Carreras I, Frise E et al (2012) Fiji: an open-source platform for biological-image analysis. Nat Methods 9:676–682
Ducret A, Quardokus EM, Brun YV (2016) MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis. Nat Microbiol 1:16,077
Mason AF, Thordarson P (2016) Synthesis of protein bioconjugates via cysteine-maleimide chemistry. J Vis Exp (113). https://doi.org/10.3791/54157
Renault K, Fredy JW, Renard P-Y et al (2018) Covalent modification of biomolecules through maleimide-based labeling strategies. Bioconjug Chem 29:2497–2513
Costa TRD, Ilangovan A, Ukleja M et al (2016) Structure of the bacterial sex F pilus reveals an assembly of a stoichiometric protein-phospholipid complex. Cell 166:1436–1444.e10
García-Nafría J, Watson JF, Greger IH (2016) IVA cloning: a single-tube universal cloning system exploiting bacterial in vivo assembly. Sci Rep 6:27,459
Reuter A, Hilpert C, Dedieu-Berne A et al (2021) Targeted-antibacterial-plasmids (TAPs) combining conjugation and CRISPR/Cas systems achieve strain-specific antibacterial activity. Nucleic Acids Res 49:3584–3598
Cayron J, Lesterlin C (2019) Multi-scale analysis of bacterial growth under stress treatments. J Vis Exp (153). https://doi.org/10.3791/60576
Clarke M, Maddera L, Harris RL et al (2008) F-pili dynamics by live-cell imaging. Proc Natl Acad Sci U S A 105:17,978–17,981
Acknowledgments
The authors thank the National BioResource Project (NBRP). This work was supported by the Schlumberger Foundation for Education and Research (FSER 2019), and the French National Research Agency (grant number ANR-18-CE35-0008, PlasMed) provided funding to K.G. The authors declared no competing interests.
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Goldlust, K., Couturier, A., Terradot, L., Lesterlin, C. (2022). Live-Cell Visualization of DNA Transfer and Pilus Dynamics During Bacterial Conjugation. In: Leake, M.C. (eds) Chromosome Architecture. Methods in Molecular Biology, vol 2476. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2221-6_6
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DOI: https://doi.org/10.1007/978-1-0716-2221-6_6
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