Abstract
Over the past two decades, significant efforts have invested in the development of strategies for the stabilization of macrocyclic peptides with α-helix structure by stapling their architectures. These strategies can be divided into two categories: side chain to side chain cross-linking and N-terminal helix nucleation. These stable macrocyclic peptides have been applied in PPI inhibitors and self-assembly materials. Compared with unmodified short peptides, stable α-helix macrocyclic polypeptides have better biophysical properties including higher serum stability, cell permeability, and higher target affinity. This chapter will systematically introduce approaches for helical stabilization of peptide macrocycles, such as ring-closing metathesis (RCM), lactamisation, cycloadditions, reversible reactions, thioether formation as well as newly found sulfonium center formation and the common use of helical stabilized macrocyclic peptides.
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References
Wojcik P, Berlicki L (2016) Peptide-based inhibitors of protein-protein interactions. Bioorg Med Chem Lett 26:707–713
Ali AM, Atmaj J, Van Oosterwijk N et al (2019) Stapled peptides inhibitors: a new window for target drug discovery. Comput Struct Biotechnol J 17:263–281
Vlieghe P, Lisowski V, Martinez J et al (2010) Synthetic therapeutic peptides: science and market. Drug Discov Today 15:40–56
Tsomaia N (2015) Peptide therapeutics: targeting the undruggable space. Eur J Med Chem 94:459–470
Hu K, Geng H, Zhang Q et al (2016) An in-tether chiral center modulates the helicity, cell permeability, and target binding affinity of a peptide. Angew Chem Int Ed Engl 55:8013–8017
Walensky LD, Bird GH (2014) Hydrocarbon-stapled peptides: principles, practice, and progress. J Med Chem 57:6275–6288
Walensky LD, Kung AL, Escher I et al (2004) Activation of apoptosis in vivo by a hydrocarbon-stapled BH3 helix. Science 305:1466–1470
Edwards TA, Wilson AJ (2011) Helix-mediated protein-protein interactions as targets for intervention using foldamers. Amino Acids 41:743–754
Tu L, Wang D, Li Z (2019) Design and synthetic strategies for helical peptides. Methods Mol Biol 2001:107–131
Zhao H, Liu QS, Geng H et al (2016) Crosslinked aspartic acids as helix-nucleating templates. Angew Chem Int Ed 55:12088–12093
Kawamoto SA, Coleska A, Ran X et al (2012) Design of triazole-stapled BCL9 alpha-helical peptides to target the beta-catenin/B-cell CLL/lymphoma 9 (BCL9) protein-protein interaction. J Med Chem 55:1137–1146
Lau YH, De Andrade P, Wu YT et al (2015) Peptide stapling techniques based on different macrocyclisation chemistries. Chem Soc Rev 44:91–102
Jackson DY, King DS, Chmielewski J et al (1991) General-approach to the synthesis of short alpha-helical peptides. J Am Chem Soc 113:9391–9392
Li Y, Lian CS, Hou ZF et al (2020) Intramolecular methionine alkylation constructs sulfonium tethered peptides for protein conjugation. Chem Commun 56:3741–3744
Wang DY, Yu MY, Liu N et al (2019) A sulfonium tethered peptide ligand rapidly and selectively modifies protein cysteine in vicinity. Chem Sci 10:4966–4972
Schiavone NM, Pirrone GF, Guetschow ED et al (2019) Combination of circular dichroism spectroscopy and size-exclusion chromatography coupled with HDX-MS for studying global conformational structures of peptides in solution. Talanta 194:177–182
Hamrang Z, Rattray NJW, Pluen A (2013) Proteins behaving badly: emerging technologies in profiling biopharmaceutical aggregation. Trends Biotechnol 31:448–458
Ezerski JC, Zhang P, Jennings NC et al (2020) Molecular dynamics ensemble refinement of intrinsically disordered peptides according to deconvoluted spectra from circular dichroism. Biophys J 118:1665–1678
Rogers DM, Jasim SB, Dyer NT et al (2019) Electronic circular dichroism spectroscopy of proteins. Chem 5:2751–2774
Hoang HN, Abbenante G, Hill TA et al (2012) Folding pentapeptides into left and right handed alpha helices. Tetrahedron 68:4513–4516
Gooding EA, Sharma S, Petty SA et al (2013) pH-dependent helix folding dynamics of poly-glutamic acid. Chem Phys 422:115–123
Rao T, Ruiz-Gomez G, Hill TA et al (2013) Truncated and helix-constrained peptides with high affinity and specificity for the cFos coiled-coil of AP-1. PLoS One 8:e59415
Morales P, Jimenez MA (2019) Design and structural characterisation of monomeric water-soluble alpha-helix and beta-hairpin peptides: State-of-the-art. Arch Biochem Biophys 661:149–167
Hong JB, Jing QQ, Yao LS (2013) The protein amide H-1(N) chemical shift temperature coefficient reflects thermal expansion of the N-H center dot center dot center dot O=C hydrogen bond. J Biomol NMR 55:71–78
Acknowledgments
We acknowledge financial support from the Natural Science Foundation of China grants 21778009, and 21977010; National Key Research and Development Program “Synthetic Biology” Key Special Project of China, 2018YFA0902504; the Natural Science Foundation of Guangdong Province, 2020A1515010522; the Shenzhen Science and Technology Innovation Committee, JCYJ20180507181527112, JCYJ201805081522131455, and JCYJ20170817172023838. We acknowledge financial support from Beijing National Laboratory of Molecular Science open grant BNLMS20160112 and Shenzhen-Hong Kong Institute of Brain Science-Shenzhen Fundamental Research Institutions grant 2019SHIBS0004. This work is supported by High-Performance Computing Platform of Peking University.
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Yang, F., Yin, F., Li, Z. (2022). Helical Stabilization of Peptide Macrocycles by Stapled Architectures. In: Coppock, M.B., Winton, A.J. (eds) Peptide Macrocycles. Methods in Molecular Biology, vol 2371. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1689-5_21
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DOI: https://doi.org/10.1007/978-1-0716-1689-5_21
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