Skip to main content

Using BioID to Characterize the RAS Interactome

  • Protocol
  • First Online:
Ras Activity and Signaling

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2262))

Abstract

Identifying the proteins that associate with RAS oncoproteins has great potential, not only to elucidate how these mutant proteins are regulated and signal but also to identify potential therapeutic targets. Here we describe a detailed protocol to employ proximity labeling by the BioID methodology, which has the advantage of capturing weak or transient interactions, to identify in an unbiased manner those proteins within the immediate vicinity of oncogenic RAS proteins.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 219.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Trinkle-Mulcahy L (2019) Recent advances in proximity-based labeling methods for interactome mapping. F1000Res 8

    Google Scholar 

  2. Kwon K, Beckett D (2000) Function of a conserved sequence motif in biotin holoenzyme synthetases. Protein Sci 9:1530–1539

    Article  CAS  Google Scholar 

  3. Varnaitė R, MacNeill SA (2016) Meet the neighbors: mapping local protein interactomes by proximity-dependent labeling with BioID. Proteomics 16:2503–2518

    Article  Google Scholar 

  4. Roux KJ, Kim DI, Raida M, Burke B (2012) A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells. J Cell Biol 196:801–810

    Article  CAS  Google Scholar 

  5. Branon TC et al (2018) Efficient proximity labeling in living cells and organisms with TurboID. Nat Biotechnol 36:880–887

    Article  CAS  Google Scholar 

  6. Adhikari H, Counter CM (2018) Interrogating the protein interactomes of RAS isoforms identifies PIP5K1A as a KRAS-specific vulnerability. Nat Commun 9:3646

    Article  Google Scholar 

  7. Hahn WC et al (1999) Creation of human tumour cells with defined genetic elements. Nature 400:464–468

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by R01CA123031 and P01CA203657 (C.M.C.) and by a Pancreatic Cancer Action Network-NCI Fredrick National Laboratory for Cancer Research KRAS Fellowship and K99CA248495 (H.A.).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Christopher M. Counter .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Adhikari, H., Counter, C.M. (2021). Using BioID to Characterize the RAS Interactome. In: Rubio, I., Prior, I. (eds) Ras Activity and Signaling. Methods in Molecular Biology, vol 2262. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1190-6_16

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-1190-6_16

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1189-0

  • Online ISBN: 978-1-0716-1190-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics