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In Vivo CRISPR/Cas9-Based Targeted Disruption and Knockin of a Long Noncoding RNA

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Functional Analysis of Long Non-Coding RNAs

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2254))

Abstract

The CRISPR/Cas9 system has been widely used as an efficient genome-editing tool for studying physiological functions of long noncoding RNAs (lncRNAs). In this chapter, we describe the experimental procedures for using the CRISPR/Cas9 system to genetically modify a long noncoding RNA in vivo through the targeted disruption and knockin approaches.

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References

  1. Cheng X, Waghulde H, Mell B, Morgan EE, Pruett-Miller SM, Joe B (2017) Positional cloning of quantitative trait nucleotides for blood pressure and cardiac QT-interval by targeted CRISPR/Cas9 editing of a novel long non-coding RNA. PLoS Genet 13:e1006961

    Article  Google Scholar 

  2. Stickrod G (1979) Ketamine/xylazine anesthesia in the pregnant rat. J Am Vet Med Assoc 175:952–953

    CAS  PubMed  Google Scholar 

  3. Chen F, Pruett-Miller SM, Davis GD (2015) Gene editing using ssODNs with engineered endonucleases. Methods Mol Biol 1239:251–265

    Article  CAS  Google Scholar 

  4. Brinkman EK, Chen T, Amendola M, van Steensel B (2014) Easy quantitative assessment of genome editing by sequence trace decomposition. Nucleic Acids Res 42:e168

    Article  Google Scholar 

  5. Filipiak WE, Saunders TL (2006) Advances in transgenic rat production. Transgenic Res 15:673–686

    Article  CAS  Google Scholar 

  6. Popova E, Bader M, Krivokharchenko A (2011) Effect of culture conditions on viability of mouse and rat embryos developed in vitro. Genes (Basel) 2:332–344

    Article  CAS  Google Scholar 

  7. Rulicke T, Haenggli A, Rappold K, Moehrlen U, Stallmach T (2006) No transuterine migration of fertilised ova after unilateral embryo transfer in mice. Reprod Fertil Dev 18:885–891

    Article  Google Scholar 

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Acknowledgments

Dr. Xi Cheng acknowledges funding support of the Dean’s Postdoctoral to Faculty Fellowship from University of Toledo College of Medicine and Life Sciences and the P30 Core Center Pilot Grant from NIDA Center of Excellence in Omics, Systems Genetics, and the Addictome. Dr. Bina Joe acknowledges grant support from the National Heart, Lung, and Blood Institute.

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Correspondence to Xi Cheng .

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Cheng, X., Peters, S.T., Pruett-Miller, S.M., Saunders, T.L., Joe, B. (2021). In Vivo CRISPR/Cas9-Based Targeted Disruption and Knockin of a Long Noncoding RNA. In: Cao, H. (eds) Functional Analysis of Long Non-Coding RNAs. Methods in Molecular Biology, vol 2254. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1158-6_19

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  • DOI: https://doi.org/10.1007/978-1-0716-1158-6_19

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1157-9

  • Online ISBN: 978-1-0716-1158-6

  • eBook Packages: Springer Protocols

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