Abstract
In this work we compare some of the freely available parallel Toolboxes for MATLAB, which differ in purpose and implementation details: while DP-Toolbox and MultiMATLAB offer a higher-level parallel environment, the goals of PVMTB and MPITB, developed by us [7], are to closely adhere to the PVM system and MPI standard, respectively. DP-Toolbox is also based on PVM, and MultiMATLAB on MPI. These Toolboxes allow the user to build a parallel application under the rapid-prototyping MATLAB environment. The differences between them are illustrated by means of a performance test and a simple case study frequently found in the literature. Thus, depending on the preferred message-passing software and the performance requirements of the application, the user can either choose a higher-level Toolbox and benefit from easier coding, or directly interface the message-passing routines and benefit from greater control and performance. Topics: Problem Solving Environments, Parallel and Distributed Computing, Cluster and Grid Computing.
Supported in part by the Spanish MCYT TIC2000-1348pro ject.
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References
J. Arndt, C. Haenel: “π-Unleashed”, Springer-Verlag, 2001, ISBN: 3540665722, http://www.jjj.de/pibook/pibook.html 237
C. Chang, G. Czajkowski, X. Liu, V. Menon, C. Myers, A.E. Trefethen, L. N. Trefethen: “The Cornell MultiMatlab Project”, Proceedings of the POOMA’96 Conference, Sanfa Fe, New-Mexico, http://www.acl.lanl.gov/Pooma96/abstracts/anne/POOMA96.html 230
R. Choi: Parallel Matlab survey, http://supertech.lcs.mit.edu/~cly/survey.html 228
Cornell Theory Center: “New Parallel Programming Tools for Matlab”, http://www.tc.cornell.edu/news/releases/2000/cmtm.asp 230
H. Dietz: “Parallel Processing HOWTO”, January 1998, Linux Documentation Project, http://aggregate.org/PPLINUX/ 236, 237
S. Dormido-Canto, A.P. Madrid, S. Dormido: “Programming on Clusters for Solving Control Problems”, Proceedings of the 4th Asian Control Conference ASCC2002, Suntec Singapore, Singapore, September 2002, Session WA9-11 PaperID 1343 in 236 http://www.ece.nus.edu.sg/ascc2002/advprog/Prog Summary.pdf http://atc.ugr.es/~javier/investigacion/papers/Seb-ASCC.pdf
J. Fernández-Baldomero: “Message Passing under Matlab”, Proceedings of the HPC 2001 (Adrian Tentner, Ed.), pp.73–82. ASTC 2001, Seattle, Washington, 228, 230, 231, 236, 238 http://www.scs.org/confernc/astc/astc01/prelim-program/html/hpc-pp.html http://atc.ugr.es/~javier/investigacion/papers/H010FernandezBaldomero002.pdf
J. Fernández-Baldomero: MPITB home page, http://atc.ugr.es/javier-bin/mpitb_eng 230
J. Fernández-Baldomero: PVMTB home page, http://atc.ugr.es/javier-bin/pvmtb_eng 230
V. GarcÍa-Osorio, B. E. Ydstie: LDParallel, Distributed Modeling of Simulation of Chemical Systems”, American Institute of Chemical Engineers, Annual Meeting, Reno NV, November 2001. http://www.aiche.org/conferences/techprogram/paperdetail.asp?PaperID=2009DSN=annual01 237
A. Geist, A. Beguelin, J. Dongarra, W. Jiang, R. Mancheck, V. Sunderam: “PVM: Parallel Virtual Machine. A Users’ Guide and Tutorial for Networked Parallel Computing”, The MIT Press, Cambridge, Massachusetts, 1994, http://www.netlib.org/pvm3/book/pvm-book.html 229
S. Goasguen, A. Butt, K. D. Colby, M. S. Lundstrom: “Parallelization of the Nanoscale Device Simulator nanoMOS 2.0 using a 100 Nodes Linux Cluster”, Proceedings of the 2nd IEEE Conference on Nanotechnology IEEE-NANO’02, Arlington VA, USA, August 2002, Session WA7#0840 in http://www.ewh.ieee.org/tc/nanotech/nano2002/techprog.html http://atc.ugr.es/~javier/investigacion/papers/SebNano02.pdf http://atc.ugr.es/~javier/investigacion/papers/IEEE-nano.pdf http://falcon.ecn.purdue.edu:8080/cgi-bin/cvsweb.cgi/ 237
W. Gropp, E. Lusk: “Reproducible Measurements of MPI Performance Characteristics”, Proceedings of the EuroPVM/MPI’99 Conference, Barcelona, Spain, September 1999, http://www-unix.mcs.anl.gov/~gropp/bib/papers/ 234, 236
W. Gropp, E. Lusk, A. Skjelum: “Using MPI: Portable Parallel Programming with the Message-Passing Interface”, The MIT Press, 1994, http://www.mcs.anl.gov/mpi/usingmpi/index.html 229
LAM Home Page, http://www.lam-mpi.org 229
The MathWorks, Inc.: “Matlab based books” web page, http://www.mathworks.com/support/books 228
The MathWorks, Inc.: “User stories” web page, http://www.mathworks.com/products/user story http://www.mathworks.com/products/matlab/description/overview.shtml 228
V. S. Menon, A.E. Trefethen: “MultiMATLAB: Integrating MATLAB with High-Performance Parallel Computing”, Proceedings of Supercomputing’97, ACM SIG ARCH and IEEE Computer Society, 1997, http://www.supercomp.org/sc97/proceedings/TECH/MENON/INDEX.HTM 228, 230, 231
C. Moler: “Why there isn’t a parallel Matlab”, Matlab news & notes, Cleve’s Corner Spring 1995, http://www.mathworks.com/company/newsletter/pdf/spr95cleve.pdf 229
C. Moler: “Matlab incorporates LAPACK”, Matlab news & notes, Cleve’s Corner Winter 2000, http://www.mathworks.com/company/newsletter/clevescorner/winter2000.cleve.shtml 229
S. Pawletta, W. Drewelow, P. Duenow, T. Pawletta, M. Suesse: “A Matlab Toolbox for Distributed and Parallel Processing”, Proceedings of the Matlab’95 Conference (C. Moler, S. Little, Eds.), MathWorks Inc., Cambridge, MA, October 1995, http://citeseer.nj.nec.com/pawletta95matlab.html 229
M. J. Quinn: “Parallel Computing Theory and Practice, 2nd Edition”, McGraw Hill, New York, 1994. 236
A.E. Trefethen, V. S. Menon, C.C. Chang, G. J. Czajkowski, C. Myers, L.N. Trefethen: “MultiMatlab: Matlab on Multiple Processors”, Tech. Report 96-239, Cornell Theory Center, 1996, ftp://ftp.tc.cornell.edu/pub/tech.reports/tr239.ps 230
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Fernández, J., Cañas, A., Díaz, A.F., González, J., Ortega, J., Prieto, A. (2003). Performance of Message-Passing MATLAB Toolboxes. In: Palma, J.M.L.M., Sousa, A.A., Dongarra, J., Hernández, V. (eds) High Performance Computing for Computational Science — VECPAR 2002. VECPAR 2002. Lecture Notes in Computer Science, vol 2565. Springer, Berlin, Heidelberg. https://doi.org/10.1007/3-540-36569-9_14
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