Abstract
In a 2003 essay E. O. Wilson outlined his vision for an “encyclopaedia of life” comprising “an electronic page for each species of organism on Earth”, each page containing “the scientific name of the species, a pictorial or genomic presentation of the primary type specimen on which its name is based, and a summary of its diagnostic traits.” Although biodiversity informatics has generated numerous online resources, including some directly inspired by Wilson’s essay (e.g., iSpecies and EOL), we are still some way from the goal of having available online all relevant information about a species, such as its taxonomy, evolutionary history, genomics, morphology, ecology, and behaviour. While the biodiversity community has been developing a plethora of databases, some with overlapping goals and duplicated content, Wikipedia has been slowly growing to the point where it now has over 100,000 pages on biological taxa. My goal in this essay is to explore the idea that, largely independent of the aims of biodiversity informatics and well-funded international efforts, Wikipedia has emerged as potentially the best platform for fulfilling E. O. Wilson’s vision.
Similar content being viewed by others
References
Bidartondo, M. I. (2008). Preserving accuracy in GenBank. Science, 319(5870), 1616.
Bizer, C., Lehmann, J., Kobilarov, G., Auer, S., Becker, C., Cyganiak, R., et al. (2009). DBpedia—A crystallization point for the Web of Data. Web Semantics: Science, Services and Agents on the World Wide Web, 7, 154–165.
Bridge, P. D., Roberts, P. J., Spooner, B. M., & Panchal, G. (2003). On the unreliability of published DNA sequences. The New Phytologist, 160, 43–48.
Buck, R. C., & Hull, D. L. (1966). The logical structure of the Linnaean hierarchy. Systematic Zoology, 15, 97.
Garfield, E. (2001). Taxonomy is small, but it has its citation classics. Nature, 413(6852), 107.
Giles, J. (2005). Internet encyclopaedias go head to head. Nature, 438(7070), 900–901.
Gregg, J. R. (1954). The language of taxonomy: An application of symbolic logic to the study of classificatory systems. New York: Columbia University Press.
Holthuis, L. B. (1987). The scientific name of the Sperm Whale. Marine Mammal Science, 3, 87–89.
Hull, D. (1990). Science as a process: An evolutionary account of the social and conceptual development of science. Chicago: University of Chicago Press.
Huss, J. W., Orozco, C., Goodale, J., Wu, C., Batalov, S., Vickers, T. J., et al. (2008). A Gene Wiki for community annotation of gene function. PLoS Biology, 6(7), e175.
Huss, J. W., Lindenbaum, P., Martone, M., Roberts, D., Pizarro, A., Valafar, F., et al. (2009). The Gene Wiki: Community intelligence applied to human gene annotation. Nucleic Acids Research, 38(Database Issue), D633–D639.
Kobilarov, G., Scott, T., Raimond, Y., Oliver, S., Sizemore, C., Smethurst, M., et al. (2009). Media meets semantic web - How the BBC uses DBpedia and linked data to make connections. In Proceedings of the 6th European Semantic Web Conference on the Semantic Web: Research and Applications (Heraklion, Crete, Greece, May 31 - June 04, 2009). Lecture Notes In Computer Science, 5554, 723–737. doi:10.1007/978-3-642-02121-3_53
Krell, F. (2002). Why impact factors don’t work for taxonomy. Nature, 415(6875), 957.
Lawrence, S. (2001). Free online availability substantially increases a paper’s impact. Nature, 411(6837), 521.
Lehmann, T. (2009). Phylogeny and systematics of the Orycteropodidae (Mammalia, Tubulidentata). Zoological Journal of the Linnean Society, 155, 649–702.
Lehmann, T., Vignaud, P., Likius, A., Mackaye, H., & Brunet, M. (2006). A sub-complete fossil aardvark (Mammalia, Tubulidentata) from the Upper Miocene of Chad. Comptes Rendus Palevol, 5, 693–703.
Lu, X., Kahle, B., Wang, J. Z., & Giles, C. L. (2008). A metadata generation system for scanned scientific volumes. In Proceedings of the 8th ACM/IEEE-CS joint conference on digital libraries (pp. 167–176). Pittsburgh, PA, USA: ACM. doi:10.1145/1378889.1378918
Nelson, G., & Platnick, N. I. (1980). Multiple branching in cladograms: Two interpretations. Systematic Zoology, 29, 86.
Nielsen, F. A. (2007). Scientific citations in Wikipedia. 0705.2106. http://arxiv.org/abs/0705.2106. Accessed 1 February 2010.
Nielsen, F. A. (2008). Clustering of scientific citations in Wikipedia. 0805.1154. http://arxiv.org/abs/0805.1154. Accessed 1 February 2010.
Page, R. D. M. (2007). TBMap: A taxonomic perspective on the phylogenetic database TreeBASE. BMC Bioinformatics, 8, 158.
Page, R. D. M. (2008). Biodiversity informatics: The challenge of linking data and the role of shared identifiers. Briefings in Bioinformatics, 9, 345–354.
Pennisi, E. (2008). DNA DATA: Proposal to ‘wikify’ GenBank meets stiff resistance. Science, 319(5870), 1598–1599.
Pickford, M. (1974). New fossil Orycteropodidae (Mammalia, Tubulidentata) from East Africa. Orycteropus minutus sp. nov. and Orycteropus chemeldoi sp. nov. Netherlands Journal of Zoology, 25, 57–88.
Rinaldo, C. (2009). The biodiversity heritage library: Exposing the taxonomic literature. Journal of Agricultural & Food Information, 10, 259–265.
Schevill, W. E. (1986). The international code of zoological nomenclature and a paradigm: The name Physeter catodon Linnaeus 1758. Marine Mammal Science, 2, 153–157.
Schevill, W. E. (1987). Mr. Schevill replies. Marine Mammal Science, 3, 89–90.
Thomas, C. (2009). Biodiversity databases spread, prompting unification call. Science, 324(5935), 1632–1633.
Viégas, F. B., Wattenberg, M., & Dave, K. (2004). Studying cooperation and conflict between authors with history flow visualizations. In Proceedings of the 2004 conference on human factors in computing systems—CHI ‘04 (pp. 575–582). Presented at the 2004 conference, Vienna, Austria. New York: Association for Computing Machinery.
Vuong, B., Lim, E., Sun, A., Le, M., & Lauw, H. W. (2008). On ranking controversies in Wikipedia: models and evaluation. In Proceedings of the international conference on web search and web data mining—WSDM ‘08 (pp. 171–182). Presented at the the international conference. New York: Association for Computing Machinery.
Waldrop, M. (2008). Big data: Wikiomics. Nature, 455(7209), 22–25.
Werner, Y. L. (2006). The case of impact factor versus taxonomy: A proposal. Journal of Natural History, 40(21), 1285.
Wilson, E. (2003). The encyclopedia of life. Trends in Ecology & Evolution, 18, 77–80.
Wilson, D., & Reeder, D. M. (Eds.). (2005). Mammal species of the world: A taxonomic and geographic reference (3rd ed.). Baltimore: Johns Hopkins University Press.
Acknowledgements
All analyses were performed on the June 18, 2009 dump of Wikipedia. Many of the ideas outlined here were first explored on my blog (http://iphylo.blogspot.com). I thank the numerous people who have provided feedback on those blog posts, as well as audiences at the Sloan Foundation and Sheffield University who have heard me talk about this topic. Alex Wild’s blog post (http://myrmecos.wordpress.com/2009/06/06/pyramica-vs-strumigenys-why-does-it-matter/) brought the edit war over Pyramica to my attention, and Tony Rees alerted me to the rather intemperate language being used in the debate over whether the proper name for the Sperm Whale is Physeter catodon or P. macrocephalus. I thank Rudolf Meier for inviting me to write this essay, and for his patience as deadlines began to slip.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Page, R.D.M. Wikipedia as an encyclopaedia of life. Org Divers Evol 10, 343–349 (2010). https://doi.org/10.1007/s13127-010-0028-9
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s13127-010-0028-9