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Cohnella candidum sp. nov., radiation-resistant bacterium from soil

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Abstract

A Gram-stain positive, endospore-forming, circular, convex, cream colored, designated strain 18JY8-7T, was isolated from soil collected in Jeju Island, South Korea. Phylogenetic analysis using 16S rRNA gene sequences showed that strain 18JY8-7T formed a distinct lineage within the family Paenibacillaceae (order Bacillales, class Bacilli), and is closely related to Cohnella rhizosphaerae (96.1%, sequence similarity) and Cohnella xylanilytica (96.0%). Optimal growth occurred at 30 °C, pH 6.5 and in the absence of NaCl. The predominant cellular fatty acids were anteiso-C15:0 and iso-C16:0. The major respiratory quinone was MK-7. The polar lipids profile comprised of diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine. The DNA G + C content was 57.0 mol %. The genotypic and phenotypic analyses revealed the differentiation of strain 18JY8-7T from all recognized Cohenella species. The strain 18JY8-7T, therefore represents a novel bacterial species within the family Paenibacillaceae, for which the name Cohnella candidum sp. nov. is proposed. The type strain is 18JY8-7T (= KCTC 33969T = JCM 33199T).

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References

  • Cai F, Wang Y, Qi H, Dai J, Yu B, An H, Rahman E, Fang C (2010) Cohnella luojiensis sp. nov., isolated from soil of a Euphrates poplar forest. Int J Syst Evol Microbiol 60:1605–1608

    Article  CAS  PubMed  Google Scholar 

  • Cappuccino JG, Sherman N (2002) Microbiology—a laboratory manual, 6th edn. Pearson Education, Inc., Benjamin Cummings

    Google Scholar 

  • Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J (2013) Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods 10:563–569

    Article  CAS  PubMed  Google Scholar 

  • Cho EA, Lee JS, Lee KC, Jung HC, Pan JG, Pyun YR (2007) Cohnella laeviribosi sp. nov., isolated from a volcanic pond. Int J Syst Evol Microbiol 57:2902–2907

    Article  CAS  PubMed  Google Scholar 

  • Choi JH, Seok JH, Jang HJ, Cha JH, Cha CJ (2016) Cohnella saccharovorans sp. nov., isolated from ginseng soil. Int J Syst Evol Microbiol 66:1713–1717

    Article  CAS  PubMed  Google Scholar 

  • Choi CY, Choi JY, Choi YJ, Yoo JH (2018) Physiological effects of various light spectra on oxidative stress by starvation in olive flounder, Paralichthys olivaceus. Mol Cell Toxicol 14:399–408

    Article  CAS  Google Scholar 

  • Felsenstein J (1985) Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  PubMed  Google Scholar 

  • Flores-Félix JD, Carro L, RamÍREZ-Bahena MH, Tejedor C, Igual JM, Peix A, Velázquez E (2014) Cohnella lupini sp. nov., an endophytic bacterium isolated from root nodules of Lupinus albus. Int J Syst Evol Microbiol 64:83–87

    Article  CAS  PubMed  Google Scholar 

  • GarcÍa-Fraile P, VelÁzquez E, Mateos PF, MartÍnez-Molina E, Rivas R (2008) Cohnella phaseoli sp. nov., isolated from root nodules of Phaseolus coccineus in Spain, and emended description of the genus Cohnella. Int J Syst Evol Microbiol 58:1855–1859

    Article  CAS  PubMed  Google Scholar 

  • Hamees A, Hung MH, Lin SY, Hsu YH, Liu YC, Shahina M, Lai WA, Huang HC, Young LS, Young CC (2013) Cohnella formosensis sp. nov., a xylanolytic bacterium isolated from the rhizosphere of Medicago sativa L. Int J Syst Evol Microbiol 63:2806–2812

    Article  CAS  Google Scholar 

  • Hiraishi A, Ueda Y, Ishihara J, Mori T (1996) Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J Gen Appl Microbiol 42:457–469

    Article  CAS  Google Scholar 

  • Huang Z, Yu Y-J, Bao Y-Y, Xia L, Sheng X-F, He L-Y (2014) Cohnella nanjingensis sp. nov., an extracellular polysaccharide-producing bacterium isolated from soil. Int J Syst Evol Microbiol 64:3320–3324

    Article  CAS  PubMed  Google Scholar 

  • Im S, Dusup S, Min-Ho J, Dongho K, Park D-H, Sangyong L (2013) Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents. Bioprocess Biosyst Eng 36:781–789

    Article  CAS  PubMed  Google Scholar 

  • Jang SA, Lee SR, Koo HJ, Lee JW, Park Y, Namkoong S, Kim MK, Kang SC, Sohn EH (2017) Gamma irradiation-induced liver injury and its amelioration by red ginseng extract. Mol Cell Toxicol 13:461–469

    Article  CAS  Google Scholar 

  • Jiang F, Dai J, Wang Y, Xue X, Xu M, Li W, Fang C, Peng F (2012) Cohnella arctica sp. nov., isolated from Arctic tundra soil. Int J Syst Evol Microbiol 62:817–821

    Article  CAS  PubMed  Google Scholar 

  • Julius M, Paul D (1962) Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5(1):109–118

    Article  Google Scholar 

  • Kämpfer P, Rosselló-mora R, Falsen E, Busse HJ, Tindall BJ (2006) Cohnella thermotolerans gen. nov., sp. nov., and classification of ‘Paenibacillus hongkongensis’ as Cohnella hongkongensis sp. nov. Int J Syst Evol Microbiol 56:781–786

    Article  CAS  PubMed  Google Scholar 

  • Kämpfer P, Glaeser SP, Mcinroy JA, Busse HJ (2014) Cohnella rhizosphaerae sp. nov., isolated from the rhizosphere environment of Zea mays. Int J Syst Evol Microbiol 64:1811–1816

    Article  CAS  PubMed  Google Scholar 

  • Kämpfer P, Glaeser SP, Busse HJ (2017) Cohnella lubricantis sp. nov., isolated from a coolant lubricant solution. Int J Syst Evol Microbiol 67:466–471

    Article  CAS  PubMed  Google Scholar 

  • Kang MS, Srinivasan S (2018) Complete genome sequence of Methylobacterium sp. 17Sr1-43, a radiation-resistant bacterium. Mol Cell Toxicol 14:453–457

    Article  CAS  Google Scholar 

  • Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS (2010a) Cohnella xylanilytica sp. nov. and Cohnella terrae sp. nov., xylanolytic bacteria from soil. Int J Syst Evol Microbiol 60:2913–2917

    Article  CAS  PubMed  Google Scholar 

  • Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS (2010b) Cohnella thailandensis sp. nov., a xylanolytic bacterium from Thai soil. Int J Syst Evol Microbiol 60:2284–2287

    Article  CAS  PubMed  Google Scholar 

  • Khianngam S, Tanasupawat S, Akaracharanya A, Kim KK, Lee KC, Lee JS (2012) Cohnella cellulosilytica sp. nov., isolated from buffalo faeces. Int J Syst Evol Microbiol 62:1921–1925

    Article  CAS  PubMed  Google Scholar 

  • Kim SJ, Weon HY, Kim YS, Anandham R, Jeon YA, Hong SB, Kwon SW (2010a) Cohnella yongneupensis sp. nov. and Cohnella ginsengisoli sp. nov., isolated from two different soils. Int J Syst Evol Microbiol 60:526–530

    Article  CAS  PubMed  Google Scholar 

  • Kim SJ, Weon HY, Kim YS, Kwon SW (2010b) Cohnella soli sp. nov. and Cohnella suwonensis sp. nov. isolated from soil samples in Korea. J Microbiol 49:1033–1038

    Article  CAS  Google Scholar 

  • Kim SJ, Weon HY, Kim YS, Kwon SW (2011) Cohnella soli sp. nov. and Cohnella suwonensis sp. nov. isolated from soil samples in Korea. J Microbiol 49:1033–1038

    Article  CAS  PubMed  Google Scholar 

  • Kim MK, Kang MS, Srinivasan S, Lee DH, Lee S-Y, Jung H-Y (2017a) Complete genome sequence of Hymenobacter sedentarius DG5BT, a bacterium resistant to gamma radiation. Mol Cell Toxicol 13:199–205

    Article  CAS  Google Scholar 

  • Kim MK, Kim JY, Kim SJ, Kim MJ, Lee JY, Kim CG, Srinivasan S (2017b) Complete genome sequence of Spirosoma pulveris JSH 5-14T, a bacterium isolated from a dust sample. Mol Cell Toxicol 13:373–378

    Article  CAS  Google Scholar 

  • Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge

    Book  Google Scholar 

  • Komagata K, Suzuki K (1987) Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207

    Article  CAS  Google Scholar 

  • Kumar S, Stecher G, Tamura K (2016) MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datadets. Mol Biol Evol 33:1870–1874

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lee Y, Jeon CO (2017) Cohnella algarum sp. nov., isolated from a freshwater green alga Paulinella chromatophora. Int J Syst Evol Microbiol 67:4767–4772

    Article  CAS  PubMed  Google Scholar 

  • Lee KC, Kim KK, Kim JS, Kim DS, Ko SH, Yang SH, Lee JS (2015) Cohnella collisoli sp. nov., isolated from lava forest soil. Int J Syst Evol Microbiol 65:3125–3130

    Article  CAS  PubMed  Google Scholar 

  • Luo X, Wang Z, Dai J, Zhang L, Fang C (2010) Cohnella damensis sp. nov., a motile xylanolytic bacteria isolated from a low altitude area in Tibet. J Microbiol Biotechnol 20:410–414

    Article  CAS  PubMed  Google Scholar 

  • Mayilraj S, Ruckmani A, Kaur C, Kaur I, Klenk HP (2013) Cohnella ferri sp. nov. a novel member of the genus Cohnella isolated from haematite ore. Curr Microbiol 62:1704–1709

    Article  CAS  Google Scholar 

  • Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241

    Article  CAS  Google Scholar 

  • Rosselló-Móra R, Trujillo ME, Sutcliffe IC (2017) Introducing a digital protologue: a timely move towards a database-driven systematics of archaea and bacteria. Syst Appl Microbiol 40:121–122

    Article  PubMed  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Bio Evol 4:406–425

    CAS  Google Scholar 

  • Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI technical note 101. MIDI Inc, Newark, DE

  • Sathiyaraj G, Kim MK, Kim JY, Kim SJ, Jang JH, Maeng S, Kang MS, Srinivasan S (2018a) Complete genome sequence of Microvirga sp. 17mud 1–3, a radiation-resistant bacterium. Mol Cell Toxicol 14:347–350

    Article  CAS  Google Scholar 

  • Sathiyaraj G, Kim MK, Kim JY, Kim SJ, Jang JH, Maeng S, Kang MS, Srinivasan S (2018b) Complete genome sequence of Nibribacter radioresistens DG15C, a radiation resistant bacterium. Mol Cell Toxicol 14:323–328

    Article  CAS  Google Scholar 

  • Selvam K, Duncan JR, Tanaka M, Battista JR (2013) DdrA, DdrD, and PprA: components of UV and mitomycin C resistance in Deinococcus radiodurans R1. PLoS ONE 8(7):e69007

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shiratori H, Tagami Y, Beppu T, Ueda K (2010) Cohnella fontinalis sp. nov., a xylanolytic bacterium isolated from fresh water. Int J Syst Evol Microbiol 60:1344–1348

    Article  CAS  PubMed  Google Scholar 

  • Smibert RM, Krieg NR (1981) General characterization. Manual of methods for general bacteriology. American Society for Microbiology, Washington DC, pp 409–442

    Google Scholar 

  • Srinivasan S, Lee SY, Kim MK, Jung HY (2017) Complete genome sequence of Hymenobacter sp. DG25A, a gamma radiation-resistant bacterium isolated from soil. Mol Cell Toxicol 13:65–72

    Article  CAS  Google Scholar 

  • Tamaoka J, Komagata K (1984) Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125–128

    Article  CAS  Google Scholar 

  • Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J (2016) NCBI prokaryotic genome annotation pipeline. Nucl Acids Res 44(14):6614–6624

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Weisburg WG, Barns SM, Pellerier DA, Lane DJ (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yoon MH, Im WT (2007) Flavisolibacter ginsengiterrae gen. nov., sp. nov. and Flavisolibacter ginsengisoli sp. nov., isolated from ginseng cultivating soil. Int J Syst Evol Microbiol 57:1834–1839

    Article  CAS  PubMed  Google Scholar 

  • Yoon JH, Jung YT (2012) Cohnella boryungensis sp. nov., isolated from soil. Antonie Van Leeuwenhoek 101:769–775

    Article  PubMed  Google Scholar 

  • Yoon MH, Ten LN, Im WT (2011) Cohnella panacarvi sp. nov., a xylanolytic bacterium isolated from ginseng cultivating soil. J Microbiol Biotechnol 17:913–918

    Google Scholar 

  • Yu SL, Lee SK (2017) Ultraviolet radiation: DNA damage, repair, and human disorders. Mol Cell Toxicol 13:21–28

    Article  CAS  Google Scholar 

Download references

Acknowledgements

This work was supported by a research grant from Seoul Women’s University (2018) and by a Grant from the National Institute of Biological Resources (NIBR), funded by the Ministry of Environment (MOE) of the Republic of Korea (NIBR201801106).

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Correspondence to Gayathri Subramani.

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Maeng, S., Kim, M.K., Jang, J.H. et al. Cohnella candidum sp. nov., radiation-resistant bacterium from soil. Antonie van Leeuwenhoek 112, 1029–1037 (2019). https://doi.org/10.1007/s10482-019-01233-3

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