Abstract
A new halophilic anaerobe was isolated from the hypersaline surface sediments of El-Djerid Chott, Tunisia. The isolate, designated as strain 6SANG, grew at NaCl concentrations ranging from 14 to 30%, with an optimum at 20–22%. Strain 6SANG was a non-spore-forming, non-motile, rod-shaped bacterium, appearing singly, in pairs, or occasionally as long chains (0.7–1 × 4–13 μm) and showed a Gram-negative-like cell wall pattern. It grew optimally at pH values between 7.2 and 7.4, but had a very broad pH range for growth (5.9–8.4). Optimum temperature for growth was 42°C (range 30–50°C). Strain 6SANG required yeast extract for growth on sugars. Glucose, sucrose, galactose, mannose, maltose, cellobiose, pyruvate, and starch were fermented. The end products from glucose fermentation were acetate, butyrate, lactate, H2, and CO2. The G + C ratio of the DNA was 34.3 mol%. Strain 6SANG exhibited 16S rRNA gene sequence similarity values of 91–92% with members of the genus Halobacteroides, H. halobius being its closest phylogenetic relative. Based on phenotypic and phylogenetic characteristics, we propose that this bacterium be classified as a novel species of a novel genus, Halanaerobaculum tunisiense gen. nov., sp. nov. The type strain is 6SANGT (=DSM 19997T = JCM 15060T).
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References
Balch WE, Fox GE, Magrum RJ, Wolfe RS (1979) Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296
Benson DA, Boguski MS, Lipman DJ, Ostell J, Ouellette BFF, Rapp BA, Wheeler DL (1999) GenBank. Nucleic Acids Res 27:12–17
Cayol JL, Ollivier B, Lawson Anani Soh A, Fardeau ML, Ageron E, Grimont PAD, Prensier G, Guezennec JM, Magot M, Garcia JL (1994a) Haloincola saccharolytica subsp. senegalensis subsp. nov., isolated from the sediments of a hypersaline lake, and emended description of Haloincola saccharolytica. Int J Syst Bacteriol 44:805–811
Cayol JL, Ollivier B, Patel BKC, Prensier G, Guezennec J, Garcia JL (1994b) Isolation and characterization of Halothermothrix orenii gen. nov., sp. nov., a halophilic, thermophilic, fermentative, strictly anaerobic bacterium. Int J Syst Bacteriol 44:534–540
Cayol JL, Ollivier B, Patel BKC, Ageron E, Grimont PAD, Prensier G, Garcia JL (1995) Haloanaerobium lacusroseus sp. nov., an extremely halophilic fermentative bacterium from the sediments of a hypersaline Lake. Int J Syst Bacteriol 45:790–797
Cord-Ruwisch R (1985) A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4:33–36
Fardeau ML, Cayol JL, Magot M, Ollivier B (1993) H2 oxidation in the presence of thiosulfate, by a Thermoanaerobacter strain isolated from an oil-producing well. FEMS Microbiol Lett 113:327–332
Hall TA (1999) BIOEDIT: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
Hungate RE (1969) Roll-tube method for the cultivation of strict anaerobes. In: Morris R, Ribbons DW (eds) Methods in microbiology, vol 3B. Academic Press, New York, pp 117–132
Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HR (ed) Mammalian protein metabolism. Academic Press, New York, pp 21–132
Magot M, Ollivier B, Patel BKC (2000) Microbiology of petroleum reservoirs. Antonie Van Leeuwenhoek 77:103–116
Maidak BL, Cole JR, Lilburn TG, Parker CT Jr, Saxman PR, Farris RJ, Garrity GM, Olsen GJ, Schmidt TM, Tiedje JM (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29:173–174
Mesbah M, Premchandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39:159–167
Miranda-Tello E, Fardeau ML, Fernández L, Ramírez F, Cayol JL, Thomas P, Garcia JL, Ollivier B (2003) Desulfovibrio capillatus sp. nov., a novel sulfate-reducing bacterium isolated from an oil field separator located in the Gulf of Mexico. Anaerobe 9:97–103
Ollivier B, Caumette P, Garcia JL, Mah RA (1994) Anaerobic bacteria from hypersaline ecosystems. Microbiol Rev 58:27–38
Oren A (2000) Change of the names Haloanaerobiales, Haloanaerobiaceae and Haloanaerobium to Halanaerobiales, Halanaerobiaceae and Halanaerobium, respectively, and further nomenclatural changes within the order Halanaerobiales. Int J Syst Evol Microbiol 50:2229–2230
Oren A (2006) The order Haloanaerobiales. In: Dworkin M et al (ed) The prokaryotes, vol 3, 3rd edn, Springer Verlag, New York, pp 809–822
Oren A, Paster BJ, Woese CR (1984a) Haloanaerobiaceae: a new family of moderately halophilic obligatory anaerobic bacteria. Syst Appl Microbiol 5:71–80
Oren A, Weisburg WG, Kessel M, Woese CR (1984b) Halobacteroides halobius gen. nov., sp. nov., a moderately halophilic anaerobic bacterium from the bottom sediments of the Dead Sea. Syst Appl Microbiol 5:58–70
Rainey FA, Zhilina TN, Boulygina ES, Stackebrandt E, Tourova TP, Zavarzin GA (1995) The taxonomic status of the fermentative halophilic anaerobic bacteria: description of Haloanaerobiales ord. nov., Halobacteroidaceae fam. nov., Orenia gen. nov. and further taxonomic rearragements at the genus and species level. Anaerobe 1:185–199
Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:405–425
Zhilina TN, Miroshnikova LV, Osipou GA, Zavarzin GA (1991) Halobacteroides lacunaris sp. nov., a new saccharolytic anaerobic extremely halophilic bacterium from a hypersaline Chokrak Lake. Mikrobiology (Engl Transl Mikrobiologiya) 60:714–724
Zhilina TN, Turova TP, Lysenko AM, Kevbrin VV (1997) Reclassification of Halobacteroides halobius Z-7287 on the basis of phylogenetic analysis as a new species Halobacteroides elegans sp. nov. Microbiology (Engl Transl Mikrobiologiya) 66:114–121
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We thank French university cooperation and the Tunisian Ministry for Scientific Technology and Development for their financial assistance (CMCU) and Pierre Thomas for help with electron microscopy. We thank also Mhamed Ben Abid for help in the physico-chemical analysis.
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Hedi, A., Fardeau, ML., Sadfi, N. et al. Characterization of Halanaerobaculum tunisiense gen. nov., sp. nov., a new halophilic fermentative, strictly anaerobic bacterium isolated from a hypersaline lake in Tunisia. Extremophiles 13, 313–319 (2009). https://doi.org/10.1007/s00792-008-0218-y
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DOI: https://doi.org/10.1007/s00792-008-0218-y