Skip to main content
SpringerLink
Log in

The first complete nucleotide sequence of a grapevine virus E variant

  • Annotated Sequence Record
  • Published:
Archives of Virology Aims and scope Submit manuscript

This is a preview of subscription content, log in via an institution to check access.

Access this article

Log in via an institution

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Fig. 1

References

  1. Nakaune R, Toda S, Mochizuki M, Nakano M (2008) Identification and characterization of a new vitivirus from grapevine. Arch Virol 153:1827–1832

    Article  CAS  PubMed  Google Scholar 

  2. Coetzee B, Freeborough M-J, Maree HJ, Celton J-M, Rees DJG, Burger JT (2010) Deep sequencing analysis of viruses infecting grapevines: Virome of a vineyard. Virology 400:157–163

    Google Scholar 

  3. White EJ, Venter M, Hiten NF, Burger JT (2008) Modified Cetyltrimethylammonium bromide method improves robustness and versatility: the benchmark for plant RNA extraction. Biotechnol J 3:1424–1428

    Article  CAS  PubMed  Google Scholar 

  4. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98

    CAS  Google Scholar 

  5. Meng B, Li C, Goszczynski DE, Gonsalves D (2005) Genome sequences and structures of two biologically distinct strains of Grapevine leafroll-associated virus 2 and sequence analysis. Virus Genes 31:31–41

    Article  CAS  PubMed  Google Scholar 

  6. Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M (2008) CDD: specific functional annotation with the conserved domain database. Nucleic Acids Res 37:205–210

    Article  Google Scholar 

  7. Aravind L, Koonin EV (2001) The DNA-repair protein AlkB, EGL-9, and leprecan define new families of 2-oxoglutarate-and iron-dependent dioxygenases. Genome Biol 2:0007.1–0007.8

    Article  Google Scholar 

  8. Van den Born E, Omelchenko MV, Bekkelund A, Leihne V, Koonin EV, Dolja VV, Falnes PØ (2008) Viral AlkB proteins repair RNA damage by oxidative demethylation. Nucleic Acids Res 36:5451–5461

    Article  PubMed  Google Scholar 

  9. Martelli GP, Adams MJ, Kreuze JF, Dolja VV (2007) Family Flexiviridae: a case study in virion and genome plasticity. Annu Rev Phytopathol 45:4.1–4.28

    Article  Google Scholar 

  10. Li H, Ruan J, Durbin R (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res 18:1851–1858

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

Anthony la Grange’s assistance with graphical presentation of data is appreciated.

Author information

Authors and Affiliations

  1. Department of Genetics, Stellenbosch University, Private Bag X1, Matieland, 7602, South Africa

    Beatrix Coetzee, Hans J. Maree, Dirk Stephan, Michael-John Freeborough & Johan T. Burger

Authors
  1. Beatrix Coetzee
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Hans J. Maree
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Dirk Stephan
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Michael-John Freeborough
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Johan T. Burger
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding author

Correspondence to Johan T. Burger.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Coetzee, B., Maree, H.J., Stephan, D. et al. The first complete nucleotide sequence of a grapevine virus E variant. Arch Virol 155, 1357–1360 (2010). https://doi.org/10.1007/s00705-010-0685-1

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00705-010-0685-1

Keywords

Search

Navigation