Abstract
Establishing chromosomal homology in comparative cytogenetics remained speculative until the advent of molecular cytogenetics. Chromosome sorting by flow cytometry and degenerate oligonucleotide primed-PCR (DOP-PCR) brought a significant simplification and impetus to chromosome painting. Comparative chromosome painting has permitted reasonable hypotheses for ancestral karyotypes at many points on the phylogenetic tree of mammals. Derived associations often provided landmarks that showed the route evolution took. More recently hybridization with cloned DNA has provided information on intrachromosomal rearrangements. BAC-FISH allows marker order, in addition to syntenies and associations, to be added to the ancestral karyotypes. Comparisons of marker order across species revealed that centromere shifts (evolutionary new centromeres) are frequent and important phenomena of chromosome evolution. Further comparison between evolutionary new centromeres and clinical neocentromeres shows that an evolutionary perspective can provide compelling, underlying, explicative grounds for contemporary genomic phenomena.
Similar content being viewed by others
References
Dutrillaux, B., Viegas-Pequignot, E., Dubos, C., and Masse, R., Complete or almost Complete Analogy of Chromosome Banding between the Baboon (Papio papio) and Man, Hum. Genet., 1978, vol. 43, no. 1, pp. 37–46.
Dutrillaux, B., Viegas-Pequignot, E., and Couturier, J., Great Homology of Chromosome Banding of the Rabbit (Oryctolagus cuniculus) and Primates, Including Man, Ann. Genet., 1980, vol. 23, no. 1, pp. 22–25.
O’Brien, S.J. and Nash, W.G., Genetic Mapping in Mammals: Chromosome Map of Domestic Cat, Science, 1982, vol. 216, no. 4543, pp. 257–265.
Wienberg, J., Jauch, A., Stanyon, R., and Cremer, T., Molecular Cytotaxonomy of Primates by Chromosomal in situ Suppression Hybridization, Genomics, 1990, vol. 8, no. 2, pp. 347–350.
Jauch, A., Wienberg, J., Stanyon, R., et al., Reconstruction of Genomic Rearrangements in Great Apes and Gibbons by Chromosome Painting, Proc. Natl. Acad. Sci. USA, 1992, vol. 89, no. 18, pp. 8611–8615.
Stanyon, R., Wienberg, J., Romagno, D., et al., Molecular and Classical Cytogenetic Analyses Demonstrate an Apomorphic Reciprocal Chromosomal Translocation in Gorilla gorilla, Am. J. Phys. Anthropol., 1992, vol. 88, no. 2, pp. 245–250.
Wienberg, J., Stanyon, R., Jauch, A., and Cremer, T., Homologies in Human and Macaca fuscata Chromosomes Revealed by in situ Suppression Hybridization with Human Chromosome Specific DNA Libraries, Chromosoma, 1992, vol. 101, nos. 5–6, pp. 265–270.
Ferguson-Smith, M.A., Yang, F., Rens, W., and O’Brien, P.C., The Impact of Chromosome Sorting and Painting on the Comparative Analysis of Primate Genomes, Cytogenet. Genome Res., 2005, vol. 108, nos. 1–3, pp. 112–121.
Stanyon, R. and Stone, G., Phylogenomic Analysis by Chromosome Sorting and Painting, Methods Mol. Biol., 2008, vol. 422, pp. 13–29.
Murphy, W.J., Fronicke, L., O’Brien, S.J., and Stanyon, R., The origin of human chromosome 1 and its homologs in placental mammals, Genome Res., 2003, vol. 13, no.8, pp. 1880–1888.
Muller, S., Stanyon, R., O’Brien, P.C., et al., Defining the Ancestral Karyotype of All Primates by Multidirectional Chromosome Painting between Tree Shrews, Lemurs and Humans, Chromosoma, 1999, vol. 108, no. 6, pp. 393–400.
Fronicke, L., Muller-Navia, J., Romanakis, K., and Scherthan, H., Chromosomal Homeologies between Human, Harbor Seal (Phoca vitulina) and the Putative Ancestral Carnivore Karyotype Revealed by Zoo-FISH, Chromosoma, 1997, vol. 106, no. 2, pp. 108–113.
Murphy, W.J., Stanyon, R., O’Brien, S.J., Evolution of Mammalian Genome Organization Inferred from Comparative Gene Mapping, Genome Biol., 2001, vol. 2, no. 6, p. REVIEWS0005.
Balmus, G., Trifonov, V.A., Biltueva, L.S., et al., Cross-Species Chromosome Painting among Camel, Cattle, Pig and Human: Further Insights into the Putative Cetartiodactyla Ancestral Karyotype, Chromosome Res., 2007, vol. 15, no. 4, pp. 499–515.
Graphodatsky, A.S., Yang, F., Dobigny, G., et al., Tracking Genome Organization in Rodents by Zoo-FISH, Chromosome Res., 2008, vol. 16, no. 2, pp. 261–274.
Graphodatsky, A.S., Yang, F., Perelman, P.L., et al., Comparative Molecular Cytogenetic Studies in the Order Carnivora: Mapping Chromosomal Rearrangements onto the Phylogenetic Tree, Cytogenet. Genome Res., 2002, vol. 96, nos. 1–4, pp. 137–145.
Kulemzina, A.I., Trifonov, V.A., Perelman, P.L., et al., Cross-Species Chromosome Painting in Cetartiodactyla: Reconstructing the Karyotype Evolution in Key Phylogenetic Lineages, Chromosome Res., 2009, vol. 17, no. 3, pp. 419–436.
Li, T., O’Brien, P.C., Biltueva, L., et al., Evolution of Genome Organizations of Squirrels (Sciuridae) Revealed by Cross-Species Chromosome Painting, Chromosome Res., 2004, vol. 12, no. 4, pp. 317–335.
Trifonov, V.A., Stanyon, R., Nesterenko, A.I., et al., Multidirectional Cross-Species Painting Illuminates the History of Karyotypic Evolution in Perissodactyla, Chromosome Res., 2008, vol. 16, no.1, pp. 89–107.
Yang, F., Graphodatsky, A.S., Li, T., et al., Comparative Genome Maps of the Pangolin, Hedgehog, Sloth, Anteater and Human Revealed by Cross-Species Chromosome Painting: Further Insight into the Ancestral Karyotype and Genome Evolution of Eutherian Mammals, Chromosome Res., 2006, vol. 14, no. 3, pp. 283–296.
Liehr, T., Heller, A., Starke, H., et al., Microdissection Based High Resolution Multicolor Banding for All 24 Human Chromosomes, Int. J. Mol. Med., 2002, vol. 9, no. 4, pp. 335–339.
Stanyon, R., Rocchi, M., Capozzi, O., et al., Primate Chromosome Evolution: Ancestral Karyotypes, Marker Order and Neocentromeres, Chromosome Res., 2008, vol. 16, no. 1, pp. 17–39.
Avarello, R., Pedicini, A., Caiulo, A., et al., Evidence for an Ancestral Alphoid Domain on the Long Arm of Human Chromosome 2, Hum. Genet., 1992, vol. 89, no. 2, pp. 247–249.
Rocchi, M., Stanyon, R., and Archidiacono, N., Evolutionary new centromeres in primates, Prog. Mol. Subcell. Biol., 2009, vol. 48, pp. 103–152.
Ventura, M., Antonacci, F., Cardone, M.F., et al., Evolutionary Formation of New Centromeres in Macaque, Science, 2007, vol. 316, no. 5822, pp. 243–246.
Marshall, O.J., Chueh, A.C., Wong, L.H., and Choo, K.H., Neocentromeres: New Insights into Centromere Structure, Disease Development, and Karyotype Evolution, Am. J. Hum. Genet., 2008, vol. 82, no. 2, pp. 261–282.
Amor, D.J., Bentley, K., Ryan, J., et al., Human Centromere Repositioning “in Progress”, Proc. Natl. Acad. Sci. USA, 2004, vol. 101, no. 17, pp. 6542–6547.
Ventura, M., Mudge, J.M., Palumbo, V., et al., Neocentromeres in 15q24-26 Map to Duplicons Which Flanked an Ancestral Centromere in 15q25, Genome Res., 2003, vol. 13, no. 9, pp. 2059–2068.
Cardone, M.F., Alonso, A., Pazienza, M., et al., Independent Centromere Formation in a Capricious, Gene-Free Domain of Chromosome 13q21 in Old World Monkeys and Pigs, Genome Biol., 2006, vol. 7, no. 10, p. R91.
Capozzi, O., Purgato, S., D’Addabbo, P., et al., Evolutionary Descent of a Human Chromosome 6 Neocentromere: A Jump Back to 17 Million Years Ago, Genome Res., 2009, vol. 19, no. 5, pp. 778–784.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © R. Stanyon, F. Bigoni, 2010, published in Genetika, 2010, Vol. 46, No. 9, pp. 1226–1233.
The article is published in the original.
Rights and permissions
About this article
Cite this article
Stanyon, R., Bigoni, F. Primate chromosome evolution: with reference to marker order and neocentromeres. Russ J Genet 46, 1087–1093 (2010). https://doi.org/10.1134/S102279541009019X
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S102279541009019X