Molecular Dynamics Showcase

By Michael McLennan

Purdue University

View interesting features of a molecular dynamics trajectory file

Launch Tool

This tool version is unpublished and cannot be run. If you would like to have this version staged, you can put a request through HUB Support.

Archive Version 0.6
Published on 05 Mar 2014 All versions

doi:10.4231/D3K649T0G cite this

Open source: license | download

Category

Tools

Published on

Abstract

This tool uses VMD as a visualization engine, but provides a simpler view of the interesting features within a molecular dynamics trajectory file. Users can choose from among a handful of views. Each view can take the user to a particular frame within the trajectory, and render that frame from a particular point of view with various options turned on.

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VMD Visual Molecular Dynamics, http://www.ks.uiuc.edu/Research/vmd/

Credits

Thanks to Alek Aksimentiev and Chen-Yu Li of the University of Illinois at Urbana-Champaign for their work in helping to design and test this tool.

Cite this work

Researchers should cite this work as follows:

  • Michael McLennan (2016), "Molecular Dynamics Showcase," https://nanohub.org/resources/mdshowcase. (DOI: 10.4231/D3K649T0G).

    BibTex | EndNote

Tags

  1. Illinois
  2. molecular dynamics (MD)
  3. nano/bio
  4. NanoBio Node at Illinois
  5. NCN Group - Biotechnology and Medicine
  6. Visual Molecular Dynamics (VMD)