This tool version is unpublished and cannot be run. If you would like to have this version staged, you can put a request through HUB Support.
PhysiCell learning by examples
Demonstrate PhysiCell modeling via sample models
Launch Tool
Archive Version 1.5
Published on 16 May 2022
Latest version: 2.4. All versions
doi:10.21981/MA98-Q027 cite this
Category
Published on
Abstract
This app allows the selection of one of multiple sample projects that are included in the PhysiCell modeling framework.
- Use the "Model" menu at the top to select a model (biorobots is the default)
- Select the "Run" tab and "Run Simulation" button ("Cancel" before it stops if you just want to see brief, early results)
- Select the "Plot" tab and "Play" the simulation results
- Begin experimenting with changing various parameters of each model. Note that the "Cell Types" tab has sub-tabs for the various aspects of a cell type phenotype.
- See the Virtual Course notes at https://github.com/physicell-training/ws2021
Publications
Ghaffarizadeh A, Heiland R, Friedman SH, Mumenthaler SM, Macklin P (2018) PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems. PLoS Comput Biol 14(2): e1005991. https://doi.org/10.1371/journal.pcbi.1005991
Cite this work
Researchers should cite this work as follows: