Taxonomy with confidence
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Comparing evolutionary distances via adaptive distance functions
2018, Journal of Theoretical BiologyCitation Excerpt :The standard distance function suggested for this model by Kimura (1980) estimates the total number of substitutions along a given evolutionary path. However, for very long evolutionary paths, in which saturation of transitions leads to noisy estimates of their counts, it is common practice to count only transversions using a formula from Cavender (1978); Farris (1973); Neymann (1971). Both formulas are valid for the purpose of phylogenetic reconstruction because they estimate additive substitution counts under the K2P model (all substitutions versus only transversions).
Molecular phylogenetics
2018, Encyclopedia of Bioinformatics and Computational Biology: ABC of BioinformaticsTheoretical guarantees for phylogeny inference from single-cell lineage tracing
2023, Proceedings of the National Academy of Sciences of the United States of AmericaAN IMPOSSIBILITY RESULT FOR PHYLOGENY RECONSTRUCTION FROM k-MER COUNTS
2022, Annals of Applied ProbabilityGibbs measures in biology and physics: The Potts model
2022, Gibbs Measures in Biology and Physics: The Potts ModelA cladistic approach to the evolution of steppe scripts
2022, International Journal of Intelligent Engineering Informatics
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