Chapter Four - Challenges With Inferring How Land-Use Affects Terrestrial Biodiversity: Study Design, Time, Space and Synthesis

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Abstract

Land use has already reshaped local biodiversity on Earth, with effects expected to increase as human populations continue to grow in both numbers and prosperity. An accurate depiction of the state of biodiversity on our planet, combined with identifying the mechanisms driving local biodiversity change, underpins our ability to predict how different societal priorities and actions will influence biodiversity trajectories. Quantitative syntheses provide a fundamental tool by taking information from multiple sources to identify generalisable patterns. However, syntheses, by definition, combine data sources that have fundamentally different purposes, contexts, designs and sources of error and bias; they may thus provide contradictory results, not because of the biological phenomena of interest, but due instead to combining diverse data. While much attention has been focussed on the use of space-for-time substitution methods to estimate the impact of land-use change on terrestrial biodiversity, we show that the most common study designs all face challenges—either conceptual or logistical—that may lead to faulty inferences and ultimately mislead quantitative syntheses. We outline these study designs along with their advantages and difficulties, and how quantitative syntheses can combine the strengths of each class of design.

Introduction

Land-use change and intensification are among the most widespread pressures facing terrestrial biodiversity worldwide. Only 39% of land has never been converted to human use; around 265,000 km2 of unaltered landscapes is lost each year, while around 290,000 km2 is abandoned and reverting to secondary vegetation (Hurtt et al., 2017). Loss of habitat to human use is the most commonly identified direct driver of global extinction risk to terrestrial species (e.g. Brummitt et al., 2015; Estrada et al., 2017). As well as global loss, local biodiversity loss is also of concern, as it can harm ecosystem function and jeopardise delivery of ecosystem services (Cardinale et al., 2012; Díaz et al., 2006; Hooper et al., 2012). Although there is consensus that global biodiversity is declining (McGill et al., 2015), there is disagreement about the average trend in local biodiversity (Dornelas et al., 2014; Gonzalez et al., 2016; McGill et al., 2015; Newbold et al., 2015; Vellend et al., 2013). Given that sustainable development depends on using natural resources sustainably (Sustainable Development Goals; Griggs et al., 2013), there is a pressing need to synthesise available evidence on how local biodiversity is changing in the face of land-use change and intensification.

One complication facing such syntheses is that many ecological aspects of the study system are likely to influence how the intensity of a given change in anthropogenic pressure affects different measures of site-level biodiversity. Observed effects can depend on—among other things—the taxonomic or functional group studied (e.g. Gibson et al., 2011; Lawton et al., 1998; Murphy and Romanuk, 2014), how long the landscape has experienced strong human impacts (Balmford, 1996), the habitat stratum sampled (Dumbrell and Hill, 2005) and the location of the study (e.g. Gibson et al., 2011). Our main focus here, however, is on a further possible source of disagreement that has recently become prominent (França et al., 2016; Gonzalez et al., 2016; Vellend et al., 2017)—the spatiotemporal design of the study. Some studies directly observe biodiversity change over time (by repeated sampling), others make spatial comparisons to infer temporal changes (space-for-time substitution), while others combine spatial and temporal comparisons. Global syntheses of time series data of assemblage diversity show no overall temporal trend (Vellend et al., 2013; Dornelas et al., 2014; but see Gonzalez et al., 2016), whereas global meta-analyses of spatial comparisons between sites varying in land use suggest a net decline in diversity (Gibson et al., 2011; Murphy and Romanuk, 2014; Newbold et al., 2015), and sampling both before and after a disturbance at both control and impact (i.e. undisturbed vs disturbed) sites can yield even larger estimates of decline (França et al., 2016).

Another aspect of study design that can affect inferences about land-use impacts on biodiversity is the experimental approach used, from manipulative experiments to correlational ‘quasi-’ or mensurative experiments (Block et al., 2001; McGarigal and Cushman, 2002). In the former, land-use change treatments are assigned by the researchers in order to minimise effects of confounding variables (e.g. randomly), while the latter approach makes use of externally imposed variation in land use. Manipulative experiments are rare, especially at a large enough spatial and temporal scale to fully capture the real-world effects of land-use change (see Ewers et al., 2011 for a notable exception), because land-use change is seldom within a researcher's control. Though much more common, quasi-experiments face the risk that the land-use variation incorporated as a predictor can also reflect other factors that may confound inferences (McGarigal and Cushman, 2002) and can rarely disentangle effects of different land-use pressures that are inherently linked (e.g. habitat loss vs fragmentation effects; Ewers and Didham, 2006).

Synthetic analyses of trends in local terrestrial biodiversity may not only be confounded by ecological differences, but also the study designs can influence the trends implied by different data sets. Recent extensive, thorough and careful syntheses of temporal and spatial comparisons disagree whether average assemblage-level diversity is declining (Newbold et al., 2015; Vellend et al., 2017). This disagreement makes it harder for global and regional assessments, such as those of the Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services (Díaz et al., 2015), to deliver clear messages about human impacts on biodiversity. To clarify how methodology can influence our capacity to detect responses of local terrestrial biodiversity to land-use change, we explicitly consider the advantages and disadvantages of the study designs most commonly used to achieve this objective. We highlight when each study design is particularly likely to mislead and suggest a new synthetic modelling framework in which all relevant designs can be incorporated. We also address the broader question of whether syntheses of published data can provide an accurate global picture of how terrestrial biodiversity is responding to human impacts.

Section snippets

Designs of Studies for Assessing Biotic Impacts of Land-Use Change

Many different sampling designs have been used to estimate the effect of land-use change on local biodiversity. Because the costs of sampling increase with numbers of sites, distances between sites and numbers of individual sampling campaigns, a study design represents different compromises between temporal data (before and after a change in land-use pressure) and spatial data (in both control and impact sites). Here we report the most common study designs in Fig. 1, according to an ongoing

Sampling Considerations

The study designs outlined earlier (and summarised in Fig. 1) are all susceptible to sampling-related issues, including the comparability and replication of spatial and temporal samples. We outline key aspects of sampling design that need to be considered to obtain meaningful comparisons of biodiversity change due to a disturbance event, highlighting the designs for which each aspect is particularly important.

Manipulative vs Correlational Approaches

Manipulative experiments are those where a land-use change or disturbance is imposed upon a system, whereas correlational approaches rely on sites showing preexisting gradients or contrasts of pressures. As mentioned in previous sections, capturing data before a land-use change requires either knowledge of when the land-use change is due to occur or a fortuitous choice of sampling sites, thus manipulative experiments often give rise to Before–After-Control–Impact or Before–After designs.

Literature Bias: Realms, Regions and Research Fields

Logistical, funding and time constraints cause biases in where and how ecologists carry out their research, and what they sample. In the context of individual studies these biases are often unimportant, but they can undermine syntheses and policy decisions based on them if the choices of individual researchers result in wider systematic bias in the ecological literature (De Palma et al., 2016; Gonzalez et al., 2016; Martin et al., 2012; McRae et al., 2017). Some study methodologies are likely

Methods for Syntheses

Study designs are not all equally informative for syntheses: they differ in quality, scope (in terms of geography, taxonomy and research field) and assumptions (Fig. 1). However, developing an accurate global picture of biodiversity responses to land-use change requires syntheses to make use of all available data, to recognise the fundamental differences in what a given study design can and cannot provide evidence for and to use modern statistical tools to account for study design when

Research Priorities

As a result of our review, we have identified three priorities for future research:

  • 1.

    How does study design shape conclusions about human impacts on local biodiversity? Very few studies have assessed whether Control–Impact and Before–After-Control–Impact designs provide similar inferences regarding biodiversity response to land use, and there is as yet no indication about whether the results emerging from these approaches can be generalised. Given the prevalence of Control–Impact studies in the

Conclusions

  • 1.

    Many different study designs can provide insight into how biodiversity responds to land-use changes and related pressures, at least when the research question is carefully tailored to consider the inherent limitations and vulnerabilities of each design.

  • 2.

    However, study designs vary in their assumptions, scope and results. Those that assume space-for-time substitution cannot capture initial biodiversity dynamics after a disturbance, but are widespread in the literature allowing powerful syntheses.

Acknowledgements

This work was supported by NERC (NE/M014533/1 to A.P.). P.A.M. was supported by the MAVA foundation (Project PFZH/118). This chapter is a contribution from the Imperial College Grand Challenges in Ecosystem and the Environment Institute. PREDICTS is endorsed by the Group on Earth Observations Biodiversity Observation Network (GEO BON).

Glossary

Global biodiversity
The diversity of life at global scales, e.g., the number of species present on earth. This large-scale biodiversity is driven by both local diversity (alpha diversity—the diversity of life at local scales) and turnover among communities (beta diversity—the differences in biodiversity from one local area to the next).
Local biodiversity
The diversity of life at local scales, e.g., the number of species at a small plot. Also referred to as alpha diversity.
Manipulative experiments

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