MOESM5 of A hybrid method for the imputation of genomic data in livestock populations

Additional file 5: Figure S3. Imputation accuracies according to minor allele frequency when pedigree information was removed. Imputation accuracies according to minor allele frequency of the marker being imputed when pedigree information was removed for 500 of the 1000 individuals in the last generation. The imputation accuracy of the hybrid method (blue), AlphaImpute (red) and MaCH (green) are plotted in different subfigures corresponding to the imputation strategies from the L15, L30, L300, L600 and L2k low-density panels to the H10k (a–e) and H2k (f–i) high-density panels. The imputation accuracies were computed among genotypes categorized into groups of allele frequencies in the following intervals: [0.0, 0.025], [0.025, 0.05], [0.05, 0.075], [0.075, 0.10], [0.10, 0.15], [0.15, 0.20], [0.20, 0.25], [0.25, 0.30], [0.30, 0.35], [0.35, 0.40], [0.40, 0.45], and [0.45, 0.50].