Additional file 6: Figure S4. of Extending colonic mucosal microbiome analysisâassessment of colonic lavage as a proxy for endoscopic colonic biopsies

Watt, Euan; Gemmell, Matthew; Berry, Susan; Glaire, Mark; Farquharson, Freda; Louis, Petra; Murray, Graeme; El-Omar, Emad; Hold, Georgina

doi:10.6084/m9.figshare.c.3606995_D3.v1

40168_2016_207_MOESM6_ESM.pdf (76.74 kB)

Additional file 6: Figure S4. of Extending colonic mucosal microbiome analysisâassessment of colonic lavage as a proxy for endoscopic colonic biopsies

journal contribution

posted on 2016-11-25, 05:00 authored by Euan Watt, Matthew Gemmell, Susan Berry, Mark Glaire, Freda Farquharson, Petra Louis, Graeme Murray, Emad El-Omar, Georgina Hold

Assessment of the uncertainty in the hierarchical cluster analysis when clustering. (A) Log2 count of sequences within families. (B) Differentially abundant OTUs between biopsy and lavage samples by LefSe and (C) the top 50 OTUs found to not be differentially abundant between biopsy and lavage samples by LEfSe. The red values are the approximately unbiased (AU) p values, the green values are the bootstrap possibility (BP) values and the grey values are the node numbers. Clusters encased by red squares indicate clusters with AU p valuesâ>â95. One thousand bootstraps were utilised. (PDF 80 kb)