12711_2022_732_MOESM1_ESM.pdf (229.89 kB)
Additional file 1 of Rare and population-specific functional variation across pig lines
journal contribution
posted on 2022-06-04, 15:27 authored by Roger Ros-Freixedes, Bruno D. Valente, Ching-Yi Chen, William O. Herring, Gregor Gorjanc, John M. Hickey, Martin JohnssonAdditional file 1: Figure S1. Population structure of the sequenced pigs according to the two first principal components. The colour clusters correspond to lines A to I.
Funding
Biotechnology and Biological Sciences Research Council Innovate UK Svenska Forskningsrådet Formas Genus plc
History
Usage metrics
Categories
Keywords
still limited knowledgeintermediate allele frequencieshigh linkage disequilibriumalternative allele frequencygenomic breeding valuessite wright ’lower allele frequenciesexplained small fractionsdifferent genetic backgroundcommercial livestock populationsparticular regarding populationnoticeably benefit acrosslow recombination rateaverage sequencing coveragepredicted functional annotationnine lines ).breed genomic predictionincluding intergenic variantsgenomic regionssmall subsetsite fstpredicted consequenceslower fstlivestock speciesgenetic linesbreed analysesincluding lofwidespread ).variant segregatedtherefore unlikelyspecific variationsignificant onessignificant lowrelated individualsregulatory variantsregulatory rolesputatively functionalproduction traitsprevalence variantsprevalence levelphenotypic variancephenotypic differencesmainly missenseimputed wholefixation indexexisting missensedistribution alongcategorized accordingassociated lowaffect applications7848 individuals610 pedigree2 %)1 ×)
Licence
Exports
RefWorks
BibTeX
Ref. manager
Endnote
DataCite
NLM
DC