Additional file 1 of Wheat in vivo RNA structure landscape reveals a prevalent role of RNA structure in modulating translational subgenome expression asymmetry
posted on 2021-12-01, 05:39authored byXiaofei Yang, Haopeng Yu, Wenqing Sun, Ling Ding, Ji Li, Jitender Cheema, Ricardo Ramirez-Gonzalez, Xuebo Zhao, Azahara C. Martín, Fei Lu, Bao Liu, Cristobal Uauy, Yiliang Ding, Huakun Zhang
Additional file 1: Figure S1. The high reproducibility of the libraries for RNA-seq and polysome-seq in tetraploid Kronos. Figure S2. Relationship between translation efficiency and translation related factors. Figure S3. NAI probing of tetraploid Kronos RNA structure in vivo. Figure S4. The high reproducibility of the SHAPE-Structure-seq libraries. Figure S5. Relationship between in vivo RNA structure and GC content in different genic regions. Figure S6. RNA structures of homoeologous genes with differences of translation efficiency (TE) in A and B subgenome. Figure S7. Comparison of SHAPE reactivities in vivo for homoeologous pairs in wheat. Figure S8. SNV affects RNA structure in vivo.
Funding
national natural science foundation of china northeast normal university biotechnology and biological sciences research council Human Frontier Science Program H2020 European Research Council