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Additional file 1 of Extending long-range phasing and haplotype library imputation algorithms to large and heterogeneous datasets

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posted on 2020-07-09, 05:25 authored by Daniel Money, David Wilson, Janez Jenko, Andrew Whalen, Steve Thorn, Gregor Gorjanc, John M. Hickey
Additional file 1: Table S1. Illumina 50 Kv2 per population phasing results from AlphaPhase for a range of core lengths. Table S2. Illumina 50 Kv2 per generation results from AlphaPhase for a range of core lengths. Table S3. Illumina HD per population results from AlphaPhase for a range of core lengths. Table S4. Illumina HD per generation results from AlphaPhase for a range of core lengths. Table S5. Illumina 50 Kv2 per population results from AlphaPhase for a range of subset sizes. Table S6. Illumina 50 Kv2 per generation results from AlphaPhase for a range of subset sizes. Table S7. Illumina HD per population results from AlphaPhase for a range of subset sizes. Table S8. Illumina HD per generation results from AlphaPhase for a range of subset sizes. Table S9. Illumina 50 Kv2 results from AlphaPhase for scenarios of different sizes. Table S10. Illumina HD results from AlphaPhase for scenarios of different sizes. Table S11. Illumina 50 Kv2 results from Eage2 for scenarios of different sizes.

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Biotechnology and Biological Sciences Research Council Medical Research Council Genus plc.

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    SNPHLI algorithmshaplotype library imputation algorithmshaplotype library imputationLRPmarkersoftware package Eagle 2. ResultsAlphaPhase 23  daysindividuals genotypedall-against-all searchesdatasets Abstract Background

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