Gb-2004-6-1-r9-2.jpg (88.81 kB)

Visualization of PeptideAtlas peptide entries in the Ensembl DAS browser as a separate track at the top called PeptideAtlas, displayed as light blue rectangles

figure

posted on 2011-12-30, 23:30 authored by Frank Desiere, Eric W Deutsch, Alexey I Nesvizhskii, Parag Mallick, Nichole L King, Jimmy K Eng, Alan Aderem, Rose Boyle, Erich Brunner, Samuel Donohoe, Nelson Fausto, Ernst Hafen, Lee Hood, Michael G Katze, Kathleen A Kennedy, Floyd Kregenow, Hookeun Lee, Biaoyang Lin, Dan Martin, Jeffrey A Ranish, David J Rawlings, Lawrence E Samelson, Yuzuru Shiio, Julian D Watts, Bernd Wollscheid, Michael E Wright, Wei Yan, Lihong Yang, Eugene C Yi, Hui Zhang, Ruedi Aebersold

Copyright information:

Taken from "Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry"

Genome Biology 2004;6(1):R9-R9.

Published online 10 Dec 2004

PMCID:PMC549070.

The Ensembl genome browser, here showing 10 kilobases (kb) on chromosome 12, can be used to zoom into the genome down to the nucleotide level. A light blue line connects peptides that map on intro/exon boundaries. Details about the peptide, including its unique identifier, peptide sequence, best PeptideProphet probability [22] (marked SCORE) and PeptideAtlas hyperlink are displayed.