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Published January 6, 2019 | Version 0.2
Software Open

SAMRI — Small Animal Magnetic Resonance Imaging

Creators

  • 1. Institute for Biomedical Engineering, ETH and University of Zurich
  • 2. Institute for Neuroinformatics, ETH Zurich and University of Zurich
  • 3. Department of Biosystems Science and Engineering, ETH Zurich
  • 4. Department of Information Technology and Electrical Engineering, ETH Zurich

Description

SAMRI (Small Animal Magnetic Resonance Imaging) - pronounced "Sam-rye" - provides fMRI preprocessing, metadata parsing, and data analysis functions and pipelines. SAMRI integrates functionalities from a number of other packages (listed under the dependencies section below) to create higher-level tools. The resulting interfaces aim to maximize reproducibility, simplify batch processing, and minimize the number of function calls required to generate figures and statistical summaries from the raw data.

The package is compatible with small rodent data acquired via Bruker systems.

Files

Files (4.1 MB)

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md5:77834f7a43ef03dc60ae90e047c4fb32
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Additional details

Related works

Is compiled by
https://github.com/IBT-FMI/SAMRI (URL)