Xiao-Xiao Han1,2†
Yan-Ge Tian2,3†Wen-Jing Liu1,2
Di Zhao2,3
Xue-Fang Liu2,3Yan-Ping Hu1,2
Su-Xiang Feng2,3*Jian-Sheng Li2,4*- 1College of Pharmacy, Henan University of Chinese Medicine, Zhengzhou, Henan, China
- 2Collaborative Innovation Center for Chinese Medicine and Respiratory Diseases Co-constructed by Henan Province and Education Ministry of P. R. China, Zhengzhou, Henan, China
- 3Academy of Chinese Medical Sciences, Henan University of Chinese Medicine, Zhengzhou, Henan, China
- 4The First Affiliated Hospital, Henan University of Chinese Medicine, Zhengzhou, Henan, China
Introduction: Acute lung injury (ALI) is a common and devastating respiratory disease associated with uncontrolled inflammatory response and transepithelial neutrophil migration. In recent years, a growing number of studies have found that Ardisiae Japonicae Herba (AJH) has a favorable anti-inflammatory effect. However, its serum material basis and molecular mechanism are still unknown in ALI treatment. In this study, metabolomics and network analysis of serum pharmacochemistry were used to explore the therapeutic effect and molecular mechanism of AJH against lipopolysaccharide (LPS)-induced ALI.
Methods: A total of 12 rats for serum pharmacochemistry analysis were randomly divided into the LPS group and LPS + AJH-treated group (treated with AJH extract 20 g/kg/d), which were administered LPS (2 mg/kg) by intratracheal instillation and then continuously administered for 7 days. Moreover, 36 rats for metabolomic research were divided into control, LPS, LPS + AJH-treated (5, 10, and 20 g/kg/d), and LPS + dexamethasone (Dex) (2.3 × 10−4 g/kg/d) groups. After 1 h of the seventh administration, the LPS, LPS + AJH-treated, and LPS + Dex groups were administered LPS by intratracheal instillation to induce ALI. The serum pharmacochemistry profiling was performed by UPLC-Orbitrap Fusion MS to identify serum components, which further explore the molecular mechanism of AJH against ALI by network analysis. Meanwhile, metabolomics was used to select the potential biomarkers and related metabolic pathways and to analyze the therapeutic mechanism of AJH against ALI.
Results: The results showed that 71 serum components and 18 related metabolites were identified in ALI rat serum. We found that 81 overlapping targets were frequently involved in AGE-RAGE, PI3K-AKT, and JAK-STAT signaling pathways in network analysis. The LPS + AJH-treated groups exerted protective effects against ALI by reducing the infiltration of inflammatory cells and achieved anti-inflammatory efficacy by significantly regulating the interleukin (IL)-6 and IL-10 levels. Metabolomics analysis shows that the therapeutic effect of AJH on ALI involves 43 potential biomarkers and 14 metabolic pathways, especially phenylalanine, tyrosine, and tryptophan biosynthesis and linoleic acid metabolism pathways, to be influenced, which implied the potential mechanism of AJH in ALI treatment.
Discussion: Our study initially elucidated the material basis and effective mechanism of AJH against ALI, which provided a solid basis for AJH application.
1 Introduction
Acute lung injury (ALI), a common and devastating respiratory disease, is induced by inhalation injury, acute pneumonia, trauma, sepsis, pulmonary edema, and acute pancreatitis (Savino et al., 2019; Bin et al., 2022; Ying et al., 2022). ALI is the leading cause of morbidity and mortality in intensive care units (SeungHye and Mallampalli, 2015; Huang et al., 2018), and the mortality rate is 35%–55% (Levitt et al., 2013). The pathological characteristics are associated with excessive immune cell activation, oxidative stress, inflammation, hypoxemia, bilateral lung infiltration, and electrolyte disturbances (Jiang et al., 2020; liu et al., 2021; Ying et al., 2022). ALI is considered an acute lung disease and has severe inflammatory response outbreaks in the lung accompanied by widespread damage to epithelial and endothelial cells, macrophage activation, and neutrophil infiltration (Wu et al., 2022; Zhang et al., 2022). Zhang et al. (2019) demonstrated that dexmedetomidine can inhibit the inflammatory response by regulating GSK-3β/STAT3-NF-κB. In addition, several studies demonstrated that some Chinese medicines (CMs) improve ALI by regulating relevant inflammatory cytokines and pathways. Scutellariae Radix can improve ALI by reducing the expression of nitric oxide (NO), tumor necrosis factor alpha (TNF-α), interleukin (IL)-6, and IL-8 (Hu et al., 2020). In addition, Sarcandra glabra combined with lycopene ameliorates histopathological injuries and decreases the levels of TNF-α and IL-6. Mitogen-activated protein kinase (MAPK) and transcription factor NF-kB were activated in lipopolysaccharide (LPS)-induced ALI rats, which exhibit a significant effect in protecting and improving LPS-induced ALI rats (Liu and Chen, 2016). Therefore, deregulating inflammatory response may play a significant role and be available for ALI treatment.
Ardisiae Japonicae Herba (AJH, Ardisia japonica (Thunb.) Blume), having a slightly bitter taste, belongs to the genus Ardisia and family Primulaceae. AJH converges the lung and liver meridians and has detoxification effects and activates blood circulation, which is recorded in the Materia Medica based on Chinese medical theory. On the basis of its anti-inflammatory (Liu et al., 2009), anti-cancer (Chang et al., 2007; Li et al., 2012), and anti-viral effects (Tien et al., 2007), AJH is widely used to improve chronic bronchitis (Xi, 2006) and hepatoma carcinoma (Gong et al., 2021). Cao et al. (2021) demonstrated that flavonoids in AJH showed an anti-inflammatory effect by regulating the levels of TNF-α and IL-1β, which could inhibit the proliferation and activation of hepatic stellate cells, and affect the immune function. In our previous study, we found that three components in AJH, namely, bergenin, luteolin, and kaempferol, decreased the IL-6 and matrix metalloproteinase (MMP) 9 levels, which showed a significant anti-inflammatory effect in a TNF-α-induced A549 cell model (Feng et al., 2022). Therefore, it can be deduced that AJH was effective against ALI through the anti-inflammatory mechanism. In order to confirm this hypothesis, we investigated the therapeutic effect and molecular mechanism of AJH on LPS-induced ALI rats by network analysis and metabolomics.
Due to the complexity of serum components of CMs, network analysis is often applied to study the pharmacological action and molecular mechanism of components or serum components by computer algorithms and network databases, including Metascape, GeneCards, and STRING (Societies, 2021; Han et al., 2022; Xiong et al., 2022). Moreover, metabolomics can comprehensively identify and quantify endogenous metabolites to systematically investigate the metabolic response and pathway by multivariate statistical analysis, which has been widely used in disease diagnosis and toxicology (Liu and Chen, 2016). Therefore, we integrate network analysis and metabolomics to investigate the material basis and the anti-inflammatory molecular mechanism of AJH against ALI. First, the serum components of AJH in the ALI model rat were identified by UPLC-Orbitrap Fusion MS. Subsequently, we further systematically hypothesized and incorporated the potential therapeutic targets and molecular mechanism based on the network analysis. Finally, the therapeutic mechanisms of AJH against ALI were evaluated by biochemical indexes and histopathology of the lung. Furthermore, the serum metabolic profile was confirmed to analyze the metabolic pathways.
2 Materials and methods
2.1 Materials
AJH (Ardisia japonica (Thunb.) Blume) was purchased from Zhangshu Tianqitang Chinese medicine Co., Ltd (Jiangxi, China; batch: 201909001) and authenticated by Dr. Suiqing Chen, Henan University of Chinese Medicine. The voucher specimen was stored at the Scientific Research Center, Henan University of Chinese Medicine, Zhengzhou. The reference standards of methyl salicylate (batch: CHB190925), kaempferol (batch: CHB190127), embelin (batch: CHB190829), hydroxygenkwanin (batch: CHB180611), rapanone (batch: CHB190723), (−)-epigallocatechin gallate (batch: CHB180307), myricitrin (batch: CHB180611), 3,4-dimethoxybenzoic acid (batch: CHB190820), ethyl gallate (batch: CHB180116), myricetin (batch: CHB180614), astilbin (batch: CHB190107), apigenin (batch: CHB180103), and (−)-epicatechin gallate (batch: CHB180305) (purity ≥98%) were obtained from Chengdu Chroma-Biotechnology Co., Ltd (Chengdu, China). Quercetin (batch: MUST-20101104, purity ≥99.35%) was purchased from Chengdu Must Bio-technology Co., Ltd. Bergenin (batch: 111532–201604, purity ≥94.1%) was obtained from National Institutes for Food and Drug Control (Beijing, China). HPLC-grade methanol and formic acid of mass grade were purchased from Thermo Fisher (United States). Ultra-pure water was prepared using a Milli-Q purification system (Millipore, Merck).
Dexamethasone acetate tablets were purchased from Anhui Jintaiyang Pharmaceutical Company Ltd (batch: 2104082; specification: 0.75 mg * 100 pills; usage and dosage: 0.75–3 mg/times and 2–4 times/day; experimental usage and dosage: 0.75 mg/times and 3 times/day). Whole-value grain feedstuff was purchased from SPF (Beijing) Biotechnology Company Ltd (SCXK (Jing) 2019–0010). LPS (batch: 039M4004V) was obtained from Sigma-Aldrich Company Ltd. The levels of IL-6 and IL-10 were quantified by the enzyme-linked immunosorbent assay (ELISA) kits obtained from Wuhan Boster Biological Technology Company Ltd.
2.2 Preparation of sample solution
2.2.1 AJH sample preparation
An accurately weighed sample (500 g) of AJH was extracted twice with 5,000 mL ethanol–water (7:3, v/v) under reflux for 1 h each time. The AJH extract was concentrated under reduced pressure to 2.4 g/mL.
2.2.2 Standard solution preparation
A total of 15 reference standards, such as methyl salicylate, kaempferol, and embelin, were accurately weighed, dissolved in methanol to prepare a mixed stock solution with appropriate concentration, and stored at 4°C until further use.
2.3 Animals and treatments
Male Sprague–Dawley rats (body weight 200 ± 20 g) (NO.: 1107261911004350) were purchased from the Animal Experimental Center of Huaxing (Henan, China, SCXK(Yu) 2019–0002). The experimental protocol was reviewed and approved by the Experimental Animal Care and Ethics Committee of Henan University of Chinese Medicine (Henan, China, SYXK(Yu) 2020–0004). The rats were housed at the Center of Experimental Animals in Henan University of Chinese Medicine, maintained under a 12 h light–dark cycle, temperature of 23°C ± 2°C, and humidity of 50%–60%, with free access to water and food (Han et al., 2022). For serum pharmacochemistry analysis, 12 rats were randomly divided into two groups (n = 6 each): LPS (treated with 10 mL/kg/d distilled water by gavage) and LPS + AJH-treated groups (treated with AJH extract 20 g/kg/d by gavage). The rats in the groups were administered LPS by intratracheal instillation (2 mg/kg) to induce ALI. After 24 h of LPS exposure, the LPS and LPS + AJH-treated groups were continuously administered for 7 days (Figure 1A). After 1 h of the last administration, the serum samples were collected, separated by centrifugation at 3,000 rpm for 15 min, and then stored at −80°C. A total of 36 rats for metabolomics analysis were divided into control (treated with 10 mL/kg/d distilled water by gavage), LPS (treated with 10 mL/kg/d distilled water by gavage), LPS + AJH-low (LPS + AJH-L) (treated with AJH extract 5 g/kg/d by gavage), LPS + AJH-medium (LPS + AJH-M) (treated with AJH extract 10 g/kg/d by gavage), LPS + AJH-high (LPS + AJH-H) (treated with AJH extract 20 g/kg/d by gavage), and LPS + dexamethasone (LPS + Dex) (treated with Dex 2.3 × 10−4 g/kg/d by gavage). The LPS + AJH-treated and LPS + Dex groups were continuously administered for 7 days. After 1 h of the last administration, the LPS, LPS + AJH-treated, and LPS + Dex groups were anesthetized by intraperitoneal injection of 20% urethane and administered LPS by intratracheal instillation (2 mg/kg) to establish an ALI model (Figure 1B). Furthermore, the LPS doses were selected as previously described (Hu et al., 2020). Subsequently, 24 h after modeling, 36 rats for metabolomic research were tested for lung function and then euthanized after anesthesia to harvest bio-samples including serum, lung tissues, and bronchoalveolar lavage fluid (BALF). Furthermore, BALF was centrifuged for 15 min at 3,000 rpm and stored at −80°C for evaluation of the inflammatory cytokine levels. The serum samples of metabolomics were collected and separated by centrifugation at 3,000 rpm for 15 min and then stored at −80°C and were used to evaluate the inflammatory cytokine levels and metabolomics analysis.
FIGURE 1. Process of animal grouping and treatment in serum pharmacochemistry and metabolomics tests. ((A) serum pharmacochemistry analysis; (B) metabolomics analysis).
2.4 Pathological parameters
According to related studies, several pathological parameters were investigated in our study, including histopathologic evaluation stained with hematoxylin and eosin (H&E), lung wet/dry (W/D) ratio, indexes of the thymus and spleen, lung function, and the levels of inflammatory cytokines (IL-6 and IL-10) in serum and BALF, to assess AJH intervention effects for the ALI model.
2.5 Serum sample preparation
For serum pharmacochemistry analysis, 1,500 µL methanol solution was mixed with 500 µL serum sample, vortexed for 6 min, and then centrifuged at 14,000 rpm for 15 min at 4°C. The supernatant was collected and dehydrated under vacuum conditions. Furthermore, dried samples were mixed with 200 μL methanol–water (1:1, v/v), followed by 6 min vortex and 15 min centrifugation (14,000 rpm, 4°C). The supernatant was then analyzed by UPLC-Orbitrap Fusion MS.
In addition, 200 µL rat serum was added to 600 µL methanol, vortexed for 6 min, centrifuged for 15 min at 14,000 rpm and 4°C, and evaporated to dryness. Next, 100 μL methanol–water (1:1, v/v) was added after a vortex and centrifugation according to similar conditions, and the supernatant was analyzed by UPLC-Orbitrap Fusion MS for metabolomics analysis.
2.6 UPLC-Orbitrap Fusion MS conditions of serum pharmacochemistry and metabolomics analysis
For serum pharmacochemistry analysis, the sample was separated for analysis on the UPLC-Orbitrap Fusion MS (Thermo Scientific, United States) equipped with a UPLC column (Hypersil GOLD 100 mm × 2.1 mm, 3 μm). The mobile phase system was composed of methanol (A) and 0.1% formic acid in water (B). The flow rate was controlled at 0.2 mL/min with a gradient program of 0–2 min, 93–70%B; 2–12 min, 70–30%B; 12–16 min, 30–20%B; and 16–27 min, 20–0%B. The column temperature and the injection volume were preset at 30°C and 5 μL, respectively. Mass spectral data acquisition was performed on Orbitrap Fusion MS equipped with an electrospray ionization source (ESI) in positive and negative ion modes. The optimal conditions of the ion source was set as follows: evaporation temperature, 275°C; sheath gas, 35 Arb; spray voltage, 3.50 Kv (in the positive ion mode) and −2.50 Kv (in the negative ion mode); auxiliary gas, 7 Arb; capillary temperature, 300°C. Scan mode: full mass (±) (resolution: 120,000); scan range: m/z 120–1,200.
For metabolomics analysis, the mobile phase system was composed of methanol (A) and 0.1% formic acid in water (B). The flow rate was controlled at 0.2 mL/min with a gradient program of 0–5 min, 93–70%B; 5–13 min, 70–48%B; 13–14 min, 48–6%B; 14–17 min, 6–3%B; and 17–20 min, 3–0%B. The temperature of the column was maintained at 30°C, and the injection volume was 5 μL. The scan range of Orbitrap Fusion MS was preset at m/z 100–1,000. The other parameters of UPLC and Orbitrap Fusion MS were consistent with serum pharmacochemistry analysis conditions.
2.7 Network analysis based on serum pharmacochemistry in ALI rats
The raw data of serum pharmacochemistry analysis were preprocessed using Compound Discoverer 3.3 software to identify the structure of serum components and further determine the aforementioned components by comparing the fragmentation pathways in Thermo Scientific™ Mass Frontier 7.0 software. The targets of the serum components were predicted from the Swiss Target Prediction database (http://www.swisstargetprediction.ch/). The GeneCards database (https://www.genecards.org/) and the Online Mendelian Inheritance in Man (OMIM) database (https://omim.org/) were used to collect the ALI-associated targets, which were searched using the keywords “acute lung injury”. To find 81 overlapping targets of AJH treatment for ALI from Venny obtained using the bioinformatics analysis platform (http://www.bioinformatics.com.cn/), which were entered into the STRING database (https://cn.string-db.org/cgi/input.pl) for protein–protein interaction (PPI) analysis, a TSV file was downloaded. The AJH–serum component–target–ALI network and PPI network were constructed using Cytoscape 3.2.1 software (Cytoscape Consortium, National Institute of General Medical Sciences, United States). Then, enrichment analysis was carried out in the Metascape database (https://metascape.org/) to predict and analyze Gene Ontology (GO) and the related signaling pathways.
2.8 Metabolomics data processing based on multivariate data analysis
Principal component analysis (PCA) was used to visualize the global chemical variations among the control, LPS, LPS + AJH-L, LPS + AJH-M, LPS + AJH-H, and LPS + Dex groups, while partial least squares-discriminant analysis (PLS-DA) was utilized to discover the potential biomarkers, which were defined as the components displaying a variable importance in projection (VIP) > 1.0 in the current work. Then, the potential biomarkers were identified by comparing the Human Metabolome Database (http://www.hmdb.ca/) and the Kyoto Encyclopedia of Genes and Genomes (http://www.kegg.ca/). The potential biomarkers were inputted into MetaboAnalyst 5.0 to reveal the related metabolic pathway. The metabolic pathways with an impact value >0.10 were considered to be the potential target pathway.
2.9 Statistical analysis
All data were expressed as the mean ± standard deviation, and statistical analysis was carried out by one-way analysis of variance using SPSS Statistics 26.0. Least significant difference analysis was applied to groups that conformed to the homogeneity test of variance, while Dunnett’s T3 test was performed for groups inconsistent with the homogeneity test of variance. α < 0.05 was considered statistically significant. All metabolomics data preprocessed using Compound Discoverer 3.3 and Mass Frontier 7.0. were inputted into SIMCA 14.1 software for the multivariate statistical analysis, including PCA and PLS-DA.
3 Results
3.1 Biochemical parameters and histopathologic analysis
Compared with the control group, IL-6 in serum and BALF was significantly upregulated and IL-10 was downregulated in the LPS group, indicating successful modeling of ALI (p < 0.01), as shown in Supplementary Table S1. The level of IL-6 in serum and BALF was decreased; however, the IL-10 expression significantly increased in LPS + AJH groups and LPS + Dex group compared with the LPS group (Figure 2B). Results of IL-6 and IL-10 levels indicated that the protective effects of AJH showed obvious improvement. In addition, AJH groups improved the parameters of lung function by regulating bronchoconstriction and airway resistance, with no significant difference, as shown in Figure 2A and Supplementary Table S2. In order to further identify the therapeutic effect of AJH, the lung W/D ratio and indexes of the thymus and spleen were detected and calculated (Figure 2C and Supplementary Table S3). Compared with the control group, the indexes of the thymus and spleen were decreased in the LPS group (p < 0.05 and 0.01). The thymus and spleen indexes of LPS + AJH-H and LPS + Dex groups were significantly increased compared with those of the LPS group (p < 0.05 and 0.01). In addition, compared with the control group, the W/D ratio in the LPS group was markedly increased, indicating severe edema (p < 0.01). The LPS + AJH-treated groups could improve lung, thymus, and spleen injury. Pathological results further indicated that the LPS group showed distinct histological changes, including alveolar ectasia, alveolar fusion, airway wall thickening, and infiltration of a mass of inflammatory cells into alveolar spaces. Pathological changes were alleviated in the LPS + AJH-treated groups (Figure 2D) compared with the LPS group. All these results showed that the ALI model was successfully established, and the LPS + AJH-L, LPS + AJH-M, and LPS + AJH-H groups have a therapeutic effect on ALI (lung function, lung W/D ratio, indexes of the thymus and spleen, and histological changes), which appeared to be dose-dependent. The AJH-treated groups could also reduce the inflammation on ALI. The anti-inflammatory activity of LPS + AJH-H and LPS + AJH-M groups was better than that of the LPS + AJH-L group.
FIGURE 2. Effect of AJH intervention on ALI based on general characteristics, biochemical analysis, and pathological changes. (A) Measurement of the relevant indexes of lung function analysis in rats, including penh, PAU, EF50, and PEFb. (B) AJH regulated the expression levels of IL-6 and IL-10 in serum and BALF. (C) Lung W/D ratio and thymus and spleen indexes. #p < 0.05, ##p < 0.01 vs the control group; *p < 0.05, **p < 0.01 vs the LPS group. (D) Histopathological changes in lung tissue and effects of AJH on the ALI model rat ((a) magnification ×50, (b) magnification ×200).
3.2 Characterization and identification of serum components in the ALI rat model
The UPLC-Orbitrap Fusion MS, an instrument with high sensitivity and accuracy, was employed to identify the serum components in the ALI rat model. The total ion chromatogram (TIC) is shown in Figure 3. A total of 71 serum components and 18 related metabolites were identified in ALI rats, and the details including name, retention time, and fragments ions are presented in Tables 1, 2. Among them, 21 components, including kaempferol, myricitrin, and hydroxygenkwanin, were classified as flavonoids; eight components, including bergenin, fraxetin, and scopoletin, were identified as phenylpropanoids; and nine terpenes and three quinones, four steroids, 26 carboxylic acids, and other components were also observed. In addition, 15 serum components were identified by comparing with the reference standards.
FIGURE 3. Total ion chromatograms (TICs) of serum pharmacochemistry of AJH in ALI model rats; flavonoids (21 in total) are marked in blue, phenylpropanoids (eight in total) are marked in orange, terpenes (nine in total) are marked in green, quinones (three in total) are marked in black, steroids (4 in total) are marked in purple, and carboxylic acid and other components (26 in total) are marked in red. (a1–3. positive ion mode; b. negative ion mode).
TABLE 1. Details about 71 serum components of AJH in ALI rats.
TABLE 2. Details about 18 related metabolites of AJH serum components in ALI rats.
3.3 Network analysis based on serum components in the ALI rat model
In network analysis, we analyzed and selected 40 components among 71 serum components identified by UPLC-Orbitrap Fusion MS, which have acted on 81 overlapping targets. The AJH–serum component–target–ALI network (Figure 4A) included 122 nodes (one AJH, 40 serum components, and 81 targets) and 422 edges. The mean degree value of the components was 6.9, which indicated that the components regulated multiple targets to achieve therapeutic effects of AJH against ALI. In addition, hydroxygenkwanin, luteolin, apigenin, kaempferol, and quercetin acted on 28, 27, 27, 26, and 24 targets, respectively. Due to their important positions in this network, the aforementioned five components were selected as core components.
FIGURE 4. Network pharmacology prediction for AJH intervention in ALI. (A) AJH–serum component–target–ALI network. (B) PPI network.
We found 81 overlapping targets to construct the PPI network (Figure 4B). The average node degree was 34.5, in which 36 targets (degree >34.5) were selected as core targets. The core targets with topological significance, including TNF, tumor protein (TP) 53, albumin (ALB), IL-6, AKT serine/threonine kinase (AKT)1, vascular endothelial growth factor A (VEGFA), epidermal growth factor receptor (EGFR), mitogen-activated protein kinase (MAPK), and toll-like receptor (TLR) 4, might play an important role in the molecular mechanism of AJH against ALI. The number of Gene Ontology (GO) biological processes (BP), GO cellular components (CC), and GO molecular functions (MF) was 1,499, 62, and 108, respectively. GOBP, GOCC, and GOMF with all top 20 p-values were screened and represented by a graphical bubble with the p-value, as shown in Figures 5A–C and Supplementary Table S4. Finally, we found 171 related signaling pathways. The top 20 p-values were represented by a graphical bubble, as shown in Figure 5D and Supplementary Table S5, which included the PI3K-Akt, AGE-RAGE, and JAK-STAT signaling pathways.
FIGURE 5. Results of GO and KEGG enrichment analyses. Bubble charts of (A) GOBP; (B) GOMF; (C) GOCC; and (D) KEGG enrichment analysis.
3.4 Metabolomics analysis
According to the established UPLC-Orbitrap Fusion MS analysis method, the serum sample data of the control, LPS, LPS + Dex, LPS + AJH-L, LPS + AJH-M, and LPS + AJH-H groups were analyzed, and the TIC spectra are shown in Figure 6A with a total of 102 metabolites annotated and identified (Table 3). PCA can reduce the dimensionality of complex datasets to form several main components, reflect the natural distribution of different groups, and find outliers (Huang et al., 2018). The data of 102 metabolites in each group were performed using SIMCA 14.1 software to establish the PCA score plot (Figure 6B). The control, LPS, LPS + Dex, and LPS + AJH-treated groups were significantly scattered and clustered. In addition, the control group was significantly separated from the LPS group, which further proved that the ALI rat model was successfully replicated, as shown in Figure 6B. Compared with the control group and LPS group, the LPS + Dex and LPS + AJH-treated groups are close to the control group and away from the LPS group. The aforementioned PCA results illustrated the effectiveness of AJH in the intervention of ALI.
FIGURE 6. Metabolomics analysis based on the multivariate statistical method. (A) Total ion chromatograms (TICs) of metabolic samples (a. positive ion mode; b. negative ion mode); (B) 3D PCA score plot; (C) 3D PLS-DA score plot; (D) VIP chart.
TABLE 3. Metabolites in serum samples.
In order to further select potential biomarkers and determine the difference between the control group and LPS group, between control, LPS groups, and LPS + AJH-treated groups, and between control, LPS groups, and LPS + Dex group, the metabolomics data were placed in a supervised method of PLS-DA (Figure 6C). The R2X, R2Y, and Q2 in the PLS-DA model were 0.782, 0.964, and 0.916, respectively (Q2 > 0.5). After setting permutations at 200 times, the permutation test of the PLS-DA model was applied to further assess the reliability level. As shown in Supplementary Figure S1, all the Q2 and R2 values of Y-permuted models were lower than those of the original models, which showed that the PLS-DA model has a significant explanation or prediction ability and is not over-fitted. Based on VIP >1.0 (Figure 6D), 43 components were selected as potential biomarkers and are presented in Table 3.
In Figure 7A, the control group and LPS group were scattered and clustered, which showed that the ALI rat model was successfully established. Then, the control, LPS, and LPS + Dex/AJH-H/AJH-M/AJH-L groups were obviously clustered into three individual groups and separated from each other (Figure 7A), and the results of the permutation test indicated that the PLS-DA model was reliable and not over-fitted (Figure 7B). According to the cleavage law of mass spectrometry, HCDM, Compound Discoverer database, and references, we identified 43 potential biomarkers. The further analysis was aimed at the content level and tendency of the identified biomarkers in each group, as shown in Figures 8A, B. Compared with the control group, the levels of L-phenylalanine, linoleic acid, L-tyrosine, methyl indole-3-acetate, propionylcarnitine, 2-methylhippuric acid, DL-carnitine, corticosterone, creatine, neosaxitoxin, 5-HEPE, 3-hydroxydecanoic acid, 3-phenyllactic acid, iloprost, quinoline, eicosapentaenoic acid, methylmalonic acid, and 2-hydroxymyristic acid were significantly upregulated in the LPS group (p < 0.05/p < 0.01). The levels of stearic acid, D-(+)-tryptophan, and hippuric acid were downregulated in the LPS group (p < 0.05/p < 0.01). We found that the LPS + AJH-treated groups had a callback effect on the aforementioned potential biomarkers (p < 0.05 and p < 0.01). Once again, the therapeutic effects of LPS + AJH-M and LPS + AJH-H groups were better than those of the LPS + AJH-L group.
FIGURE 7. Metabolomics analysis between control and LPS groups, between control, LPS, and LPS + Dex groups, between control, LPS, and LPS + AJH-H groups, between control, LPS, and LPS + AJH-M groups, and between control, LPS, and LPS + AJH-L groups. (A) PLS-DA score plot; (B) permutation test of the PLS-DA model.
FIGURE 8. Systems analysis of potential metabolomic biomarkers in each group. (A) Histogram of the relative content of potential metabolomic biomarkers (#p < 0.05, ##p < 0.01 vs the control group; *p < 0.05, **p < 0.01 vs the LPS group). (B) Heatmap of potential metabolomic biomarkers in control, LPS, LPS + Dex, LPS + AJH-H, LPS + AJH-M, and LPS + AJH-L groups. (C) Metabolic pathway analysis associated with the pathogenesis of ALI using MetaboAnalyst 5.0 (a. linoleic acid metabolism; b. phenylalanine, tyrosine, and tryptophan biosynthesis; c. phenylalanine metabolism; d. tyrosine metabolism; e. tryptophan metabolism; f. steroid hormone biosynthesis; g. valine, leucine, and isoleucine degradation; h. arginine and proline metabolism; i. pantothenate and CoA biosynthesis; j. aminoacyl-tRNA biosynthesis; k. valine, leucine, and isoleucine biosynthesis; l. ubiquinone and other terpenoid–quinone biosynthesis; m. glycine, serine, and threonine metabolism; n. biosynthesis of unsaturated fatty acids).
To further classify the metabolic pathways related to ALI, the 43 identified metabolic biomarkers were introduced into MetaboAnalyst 5.0 software to obtain 14 metabolic pathways, as shown in Figure 8C and Table 4. Based on the screening criteria of the pathway impact value greater than 0.1 and literature reports (Hu et al., 2020), four metabolic pathways closely associated with AJH intervention in ALI were obtained: linoleic acid metabolism, phenylalanine, tyrosine, and tryptophan biosynthesis, phenylalanine metabolism, and tyrosine metabolism.
TABLE 4. Details about 14 metabolic pathways.
4 Discussion
ALI is caused by the excessive release of the inflammatory cytokines to break the balance of inflammatory and anti-inflammatory cytokines, which can further develop into the systemic inflammatory response syndrome (SIRS), acute respiratory distress syndrome (ARDS), and eventually to multiple organ failure (MOF) (Liu and Chen, 2016). Therefore, inflammation is of great significance in ALI, especially chronic obstructive pulmonary disease and acute exacerbation of chronic obstructive pulmonary disease. Inflammation causes the infiltration of inflammatory cells and can release the chemokines and pro-inflammatory cytokines (Han et al., 2022; Yuan et al., 2022). The related study has demonstrated that TNF-α, IL-1β, IL-6, IL-8, and IL-18 are most closely associated with the outcome of ALI and are the current diagnosis and prognosis method (Parsons et al., 2005). Lv et al. (2021) indicated that fluorofenidone has a therapeutic effect on ALI by alleviating the lung tissue structure and decreasing the levels of IL-1β, IL-6, and TNF-α in the BALF. In our study, the level of IL-6 and IL-10 in serum and BALF were significantly upregulated or downregulated in ALI model rats compared with the control group, which might imply that AJH had anti-inflammatory capability. In addition, the lung wet/dry (W/D) ratio and indexes of the thymus and spleen in the LPS group were markedly elevated. The aforementioned indexes were also improved in the AJH-treated groups at different levels. Therefore, our study proved that AJH improved lung function and decreased systemic inflammation and provided evidence of an anti-inflammatory role of AJH at multiple levels. In our histopathological study, marked inflammatory cell infiltration, alveolar ectasia and fusion, and bronchiolar stenosis were improved in the AJH-treated groups at different levels.
In our previous study, we identified 236 components in AJH. Network analysis indicated that 41 core components could regulate the inflammation-related pathways, and the core components have anti-inflammatory effects (Feng et al., 2022). According to Bencao Shiyi, AJH is effective in reducing swelling, resolving phlegm, and relieving cough, which is widely used for treating cough, wheezing, blood in sputum, chronic bronchitis, and damp heat jaundice. Zhou et al. (2012) investigated and found that AJH is effective in preventing respiratory diseases, which can relieve symptoms and improve the pulmonary function in chronic obstructive pulmonary disease. Recently, network analysis illustrates the complex interactions among the biological systems, drugs, and disease from a network perspective, which opens avenues for new research ideas and technical means to study the action mechanisms of the CM formulae (Li, 2021). In our study, we further identified the serum components in ALI rats and used integrated network analysis and metabolomics to study the therapeutic effects of AJH in the ALI treatment. We identified a total of 71 serum components and 18 related metabolites in the ALI rat model, mainly including flavonoids, phenylpropanoids, and terpenes.
Because serum components in AJH might act on the diverse potential targets, we collected targets of serum components and targets associated with ALI to further explore the mechanisms underlying AJH against ALI by network analysis. According to degree values in the AJH–component–target–ALI network, we selected the five core serum components, including hydroxygenkwanin, luteolin, apigenin, kaempferol, and quercetin. The aforementioned core serum components of AJH belonged to flavonoids. Flavonoids are ubiquitous in all vascular plants and have been recognized to possess anti-inflammatory, anti-atherogenic, anti-allergic, and anti-cancer activities in vitro and in vivo (Ana et al., 2008; Chagas et al., 2022). Jiang et al. (2014) indicated that hydroxygenkwanin, luteolin, and apigenin possess immunoregulatory functions in LPS-activated RAW264.7 cells by suppressing the production of NO, which shows significant anti-inflammatory and antioxidant activities. In our previous study, luteolin, kaempferol, and quercetin showed an anti-inflammatory effect by regulating the IL-6 and MMP9 levels in the TNF-α-induced A549 cell model (Han et al., 2021; Feng et al., 2022). In addition, the PPI network was constructed to select the key targets among 81 overlapping targets, including TNF, TP53, ALB, IL-6, AKT1, VEGFA, EGFR, MAPK, and TLR4. The related studies revealed that IL-6, VEGFA, EGFR, and MAPK are linked to inflammatory pathogenesis of ALI (Chu et al., 2016; Ying et al., 2022). These key targets might be regulated to achieve anti-inflammatory activity of AJH against ALI. According to GO and KEGG analysis, some targets among the 81 overlapping targets are highly enriched inflammatory-related pathways, including the PI3K-Akt, AGE-RAGE, and JAK-STAT signaling pathways. Yu et al. (2022) suggested that the AGE-RAGE signaling pathway is activated to further increase the levels of pro-inflammatory cytokines, including IL-1β and TNF. The relevant studies illustrated that the PI3K-AKT could regulate downstream inflammatory cytokines, which plays a crucial role in inflammatory response (Schaper and Rose-John, 2015; Nazanin et al., 2020). Therefore, the serum components of AJH might act on 81 overlapping targets to regulate inflammatory-related pathways.
The metabolomics analysis revealed some potential biomarkers related with the therapeutic effects of AJH for LPS-induced ALI. Upregulation of L-Phenylalanine and downregulation of L-tyrosine in the ALI rat model were the intermediates of phenylalanine, tyrosine, and tryptophan biosynthesis. Capuron et al. (2011) illustrated that increased inflammation is linked to reduced tryptophan levels to improve tryptophan catabolism, and the inflammation was associated with increasing phenylalanine levels at the expense of tyrosine. We found that L-phenylalanine and L-tyrosine concentrations were called back in the LPS + AJH-treated groups, indicating the therapeutic effects of AJH on LPS-induced ALI rats. In addition, due to mitochondria being vulnerable to oxidation stress and pro-inflammatory mediators (Liu and Chen, 2016). Ji (2020), a LPS-induced macrophage inflammatory environment reduces the core enzyme levels of mitochondria and affects mitochondrial function that is closely related to the stability of the citrate cycle. In our study, the creatine levels associated with the citrate cycle were significantly downregulated in the LPS + AJH-treated groups, which revealed that AJH could protect LPS-induced ALI rats by restoring the disordered metabolism. Furthermore, the relative study suggested that fatty acids and derivatives play essential roles in various physiological processes, which have endogenous anti-inflammatory, antibacterial, antifungal, antiviral, and immunomodulatory agents (Das, 2018) and were considered clinical diagnosis indexes associated with inflammation (Does et al., 2018). Linoleic acid, as typical essential fatty acids, is a precursor and generates dihomo-gamma-linolenic acid and arachidonic acid (Evans et al., 2014). According to our results, the levels of linoleic acid in ALI rats were increased, but its concentration was called back in the LPS + AJH-treated groups. The previous study showed that arachidonic acid, as an important precursor of inflammatory mediators (eicosanoids), can regulate inflammatory and immune responses (Chandrasekharan et al., 2016). Meanwhile, arachidonic acid was related to inflammatory pathways including TLR4 and MAPK (Mateu et al., 2016), which could be evidenced from our network analysis results. Moreover, the level of arachidonic acid among 102 metabolites was decreased in ALI rats in our study, which may be converted into pro-inflammatory products and is consistent with the previous results (Wang et al., 2020).
Therefore, AJH modulation on potential biomarker metabolism might be related to the regulation of inflammatory-related pathways selected by network analysis of serum components. In addition, we further hypothesized that AJH exerts anti-inflammatory activity in the LPS-induced ALI model by regulating potential biomarkers, including L-phenylalanine, L-tyrosine, and linoleic acid levels in phenylalanine, tyrosine, and tryptophan biosynthesis and linoleic acid metabolism. Thus, the regulation of AJH on phenylalanine, tyrosine, and tryptophan biosynthesis and linoleic acid metabolism may be associated with its alleviatory effects on inflammation responses in vivo to improve LPS-induced ALI. Our study initially elucidated serum material basis and effective mechanism of AJH in the ALI treatment by network analysis and untargeted metabolomics. For a better understanding of the molecular mechanism of potential biomarkers and related metabolism pathways, targeted metabolomics, proteomics, and genomics need to be studied further.
5 Conclusion
In our study, we integrated metabolomics and network analysis of serum pharmacochemistry and systematically unrevealed the material basis and molecular mechanism of AJH in the ALI treatment. A total of 71 serum components and 18 related metabolites were identified by UPLC-Orbitrap Fusion MS. After network analysis of the aforementioned serum components, five core flavonoid components were selected. Preliminarily, AJH was hypothesized to treat ALI by modulating the core targets, including TNF, TP53, ALB, IL-6, AKT1, MAPK, and TLR4, and related signaling pathways (PI3K-Akt, AGE-RAGE, and JAK-STAT), which laid the foundation for the specific molecular mechanism of ALI treatment by AJH. Meanwhile, metabolomics results showed that AJH was effective in treating ALI by alleviating infiltration of inflammatory cells in alveolar spaces and regulating the expression of inflammatory cytokines. AJH might link to reverse the abnormality of phenylalanine, tyrosine, and tryptophan biosynthesis and linoleic acid metabolism pathways to regulate the concentrations of potential biomarkers to normal levels. Therefore, AJH could alleviate inflammation responses in the ALI treatment.
Data availability statement
The original contributions presented in the study are included in the article/Supplementary Material; further inquiries can be directed to the corresponding authors.
Ethics statement
The experimental protocol was reviewed and approved by the Experimental Animal Care and Ethics Committee of Henan University of Chinese Medicine.
Author contributions
X-XH and Y-GT designed the study, analyzed the data, and drafted the manuscript. Y-GT and Y-PH performed animal experiments. W-JL, DZ, X-FL, and Y-PH designed this study and analyzed the corresponding data. S-XF and J-SL designed, supervised, and reviewed the manuscript. All authors contributed to the article and approved the submitted version.
Funding
This work was supported by the Henan Province Science and Technology Key Projects Fund (222102310375), Henan University of Chinese Medicine In-school Support Projects Fund (MP 2021–14), and Collaborative Innovation Center for Chinese Medicine and Respiratory Diseases co-constructed by Henan Province and Education Ministry of P.R. of China [(2022)002].
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
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Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fphar.2023.1131479/full#supplementary-material
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Glossary
Keywords: Ardisiae Japonicae Herba, serum pharmacochemistry, network analysis, metabolomics, acute lung injury
Citation: Han X-X, Tian Y-G, Liu W-J, Zhao D, Liu X-F, Hu Y-P, Feng S-X and Li J-S (2023) Metabolomic profiling combined with network analysis of serum pharmacochemistry to reveal the therapeutic mechanism of Ardisiae Japonicae Herba against acute lung injury. Front. Pharmacol. 14:1131479. doi: 10.3389/fphar.2023.1131479
Received: 25 December 2022; Accepted: 07 July 2023;
Published: 24 July 2023.
Edited by:
Uraiwan Panich, Mahidol University, ThailandReviewed by:
Bin Yang, Zaozhuang University, ChinaMaria Bove, University of Foggia, Italy
Laiba Arshad, Forman Christian College, Pakistan
Copyright © 2023 Han, Tian, Liu, Zhao, Liu, Hu, Feng and Li. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Su-Xiang Feng, fengsx221@163.com; Jian-Sheng Li, li_js8@163.com
†These authors have contributed equally to this work and share first authorship