Four sediment samples were collected from an outcrop of the Holocene-raised beach in Skarvsnes (Lützow-Holm Bay, East Antarctica) at an elevation of 0–10 m through a geomorphological survey conducted during the 46th Japanese Antarctic Research Expedition (JARE 46). These samples were used for grain size, CNS (carbon, nitrogen, and sulfur) elemental, and ostracod analyses. The ¹⁴C dating of an annelid tube collected from the same outcrop was also conducted using an accelerator mass spectrometry. The resultant age was estimated at approximately 5,800 cal. year BP. A total of 16 ostracod species belonging to 10 genera were identified for the first time from all study samples near Lake Suribachi-Ike, Lützow–Holm Bay, East Antarctica. The phytal species were found to be the most dominant, suggesting rich seagrass and/or seaweeds at that time. Autecological methods and modern analog technique of ostracod assemblages were used to estimate the paleoenvironment. The result from the modern analog technique suggested that the paleo-water depth of approximately 30 m at that time is the most probable estimation, implying the glacial-isostatic uplift of approximately 30–40 m (5.1–6.8 mm/year) until sample date.