Czech J. Food Sci., 2023, 41(4):287-294 | DOI: 10.17221/114/2022-CJFS

Development of a novel invA gene-based real-time PCR assay for the detection of Salmonella in foodOriginal Paper

Marko Dmitric1*, Dejan Vidanovic1, Kazimir Matovic1, Bojana Tesovic1, Milanko Sekler1, Ivan Vicic2, Nedjeljko Karabasil2
1 Veterinary Specialised Institute Kraljevo, Kraljevo, Serbia
2 Faculty of Veterinary Medicine, University of Belgrade, Belgrade, Serbia

In this study, the primers and the probe were designed, and a completely new real-time polymerase chain reaction (PCR) protocol for detecting the invA gene of Salmonella in food was optimised and validated in-house. The inclusivity test used 76 different Salmonella isolates with no false-negative results. The exclusivity was tested using 45 non-Salmonella microorganisms with no false-positive results. The method was also successfully applied while examining five different artificially contaminated food categories. The results were compared to the standard method (ISO 6579-1) and two previously validated real-time PCR methods. The developed assay is sensitive and specific for rapidly detecting Salmonella in food.

Keywords: molecular detection; food safety; validation; pathogen; artificial contamination

Accepted: August 8, 2023; Prepublished online: August 17, 2023; Published: August 29, 2023  Show citation

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Dmitric M, Vidanovic D, Matovic K, Tesovic B, Sekler M, Vicic I, Karabasil N. Development of a novel invA gene-based real-time PCR assay for the detection of Salmonella in food. Czech J. Food Sci.. 2023;41(4):287-294. doi: 10.17221/114/2022-CJFS.
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References

  1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. (1990): Basic local alignment search tool. Journal of Molecular Biology, 215: 403-410. Go to original source... Go to PubMed...
  2. Anderson A., Pietsch K., Zucker R., Mayr A., Müller-Hohe E., Messelhäusser U., Sing A., Busch U., Huber I. (2011): Validation of a Duplex Real-Time PCR for the detection of Salmonella spp. in different food products. Food Analytical Methods, 4: 259-267. Go to original source...
  3. Broeders S., Huber I., Grohmann L., Berben G., Taverniers I., Mazzara M., Roosens N., Morisset D. (2014): Guidelines for validation of qualitative real-time PCR methods. Trends in Food Science & Technology, 37: 115-126. Go to original source...
  4. Bustin S.A., Benes V., Garson J.A., Hellemans J., Huggett J., Kubista M., Mueller R., Nolan T., Pfaffl M.W., Shipley G.L., Vandesompele J., Wittwer C.T. (2009): The MIQE Guidelines: Minimum information for publication of quantitative real-time PCR experiments. Clinical Chemistry, 55: 611-622. Go to original source... Go to PubMed...
  5. Dmitric M., Vidanovic D., Matovic K., Sekler M., Saric L., Arsic M., Karabasil N. (2018): In-house validation of real-time PCR methods for detecting the INV A and TTR genes of Salmonella spp. in food. Journal of Food Processing and Preservation, 42: 1-9. Go to original source...
  6. Dmitric M. (2019): The detection of Salmonella species and characterization of Salmonella Enteritidis and Salmonella Typhimurium from food chain. [Ph.D. Thesis.] Belgrade, University of Belgrade, Faculty of Veterinary Medicine.
  7. EFSA (2019): EFSA Scientific report on the European Union One Health 2018 Zoonoses Report. European Food Safety Authority. EFSA Journal, 7: 276.
  8. Fàbrega A., Vila J. (2013): Salmonella enterica serovar Typhimurium skills to succeed in the host: Virulence and regulation. Clinical Microbiology Reviews, 26: 308-341. Go to original source... Go to PubMed...
  9. Forootan A., Sjöback R., Björkman J., Sjögreen B., Linz L., Kubista M. (2017): Methods to determine the limit of detection and limit of quantification in quantitative real-time PCR (qPCR). Biomolecular Detection and Quantification, 12: 1-6. Go to original source... Go to PubMed...
  10. Garrido A., Chapela M.J., Román B., Fajardo P., Vieites J.M., Cabado A.G. (2013): In-house validation of a multiplex real-time PCR method for simultaneous detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes. International Journal of Food Microbiology, 164: 92-98. Go to original source... Go to PubMed...
  11. Grohmann L., Broll H., Dagand E., Hildebrandt S., Hübert P., Kiesecker H., Lieske K., Mäde D., Mankertz J., Reiting R., Schulze M., Speck B., Uhlig S., Wahler D., Waiblinger H-U., Woll K., Zur K. (2016): Guidelines for the single-laboratory validation of qualitative real-time PCR methods. Braunschweig, Federal Office of Consumer Protection and Food Safety: 1-17.
  12. ISO (2011): Microbiology of food and animal feeding stuffs - Polymerase chain reaction (PCR) for the detection and quantification of food-borne pathogens - Performance characteristics (ISO 22118: 2011). Available at https://www.iso.org/home.html (accessed Jan 13, 2015).
  13. ISO (2017): Microbiology of the food chain - Horizontal method for the detection, enumeration and serotyping of Salmonella - Part 1: Detection of Salmonella spp. (ISO 6579-1: 2017). Available at https://www.iso.org/home.html (accessed Sept 21, 2017).
  14. Law J.W.F., Mutalib N.S.A., Chan K.G., Lee L.H. (2014): Rapid methods for detecting foodborne bacterial pathogens: Principles, applications, advantages and limitations. Frontiers in Microbiology, 5: 1-19. Go to original source... Go to PubMed...
  15. Malorny B., Paccassoni E., Fach P., Bunge C., Martin A., Helmuth R., Aliments S. (2004): Diagnostic real-time PCR for detection of Salmonella in food. Applied and Environmental Microbiology, 70: 7046-7052. Go to original source... Go to PubMed...
  16. Raymaekers M., Smets R., Maes B., Cartuyvels R. (2009): Checklist for optimization and validation of real-time PCR assays. Journal of Clinical Laboratory Analysis, 23: 145-151. Go to original source... Go to PubMed...
  17. Rozen S., Skaletsky H. (2000): Primer 3 on the www for general users and for biologist programmers. Methods in Molecular Biology, 132: 365-386. Go to original source... Go to PubMed...
  18. TFS (2016): Real-Time PCR Handbook. 3rd Edition. Thermo Fisher Scientific. Available at https://www.thermofisher.com/content/dam/LifeTech/global/Forms/PDF/real-time-pcr-handbook.pdf (accessed May 9, 2018).

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