Abstract
As the importance of data in today’s research increases, the effective management of research data is of central interest for reproducibility. Research is often conducted in large interdisciplinary consortia that collaboratively collect and analyse such data. This raises the need of intra-consortia data sharing. In this article, we propose the use of data management platforms to facilitate this exchange among research partners. Based on the experiences of a large research project, we customized the CKAN software to satisfy these needs for intra-consortia data sharing.
Funding statement: Funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) – SFB 1270/1 - 299150580.
About the authors
M. Sc. Max Schröder is a doctoral researcher at the CRC 1270 ELAINE with interests incl. provenance modeling, virtual research environments, artificial intelligence, and reproducible science.
Hayley LeBlanc is a student at Denison University and worked at the University of Rostock during a DAAD Research Internships in Science and Engineering (RISE) internship.
Prof. Dr.-Ing. Sascha Spors is professor of signal theory and digital signal processing. His research interests are focused around audio signal processing, capture and reproduction of spatial sound, virtual acoustics and open science.
Dr.-Ing. Frank Krüger is currently a Senior Research Scientist in research data management. His research interests include provenance modeling, natural language processing and artificial intelligence as well as open science, and research data management in interdisciplinary teams.
References
1. Dataverse Website. URL https://dataverse.org/. Last visited: Dec. 5th, 2019.Search in Google Scholar
2. CKAN Open Source Data Portal Website. URL https://ckan.org/. Last visited: Dec. 5th, 2019.Search in Google Scholar
3. DCAT-extension Website. URL https://github.com/ckan/ckanext-dcat. Last visited: Dec. 5th, 2019.Search in Google Scholar
4. DisablePW-extension Website. URL https://github.com/SFB-ELAINE/ckanext-disablepwreset. Last visited: Dec. 5th, 2019.Search in Google Scholar
5. DSpace Website. URL https://duraspace.org/dspace/. Last visited: Dec. 5th, 2019.Search in Google Scholar
6. elabFTW Website. URL https://www.elabftw.net/. Last visited: Dec. 5th, 2019.Search in Google Scholar
7. ELAINETheme-extension Website. URL https://github.com/SFB-ELAINE/ckanext-elaine_theme. Last visited: Dec. 5th, 2019.Search in Google Scholar
8. CRC 1270 ELAINE Website. URL https://www.elaine.uni-rostock.de/. Last visited: Dec. 5th, 2019.Search in Google Scholar
9. figshare Website. URL https://figshare.com/. Last visited: Dec. 5th, 2019.Search in Google Scholar
10. GIT Website. URL https://git-scm.com/. Last visited: Dec. 5th, 2019.Search in Google Scholar
11. LDAP-extension Website. URL https://github.com/NaturalHistoryMuseum/ckanext-ldap. Last visited: Dec. 5th, 2019.Search in Google Scholar
12. openBIS Website. URL https://labnotebook.ch/. Last visited: Dec. 5th, 2019.Search in Google Scholar
13. OpenProject Website. URL https://www.openproject.org/. Last visited: Dec. 5th, 2019.Search in Google Scholar
14. Open Science Framework Website. URL https://osf.io/. Last visited: Dec. 5th, 2019.Search in Google Scholar
15. Papaya Javascript Framework Website. URL http://ric.uthscsa.edu/mango/papaya.html. Last visited: Dec. 5th, 2019.Search in Google Scholar
16. PDFView-extension Website. URL https://github.com/hayley-leblanc/ckanext-pdfview. Last visited: Dec. 5th, 2019.Search in Google Scholar
17. PrivateDatasets-extension Website. URL https://github.com/conwetlab/ckanext-privatedatasets. Last visited: Dec. 5th, 2019.Search in Google Scholar
18. Redmine Website. URL https://redmine.org/. Last visited: Dec. 5th, 2019.Search in Google Scholar
19. RSpace Website. URL https://www.researchspace.com/. Last visited: Dec. 5th, 2019.Search in Google Scholar
20. Microsoft Sharepoint Website. URL https://office.microsoft.com/de-de/sharepoint/. Last visited: Dec. 5th, 2019.Search in Google Scholar
21. SVN Website. URL https://subversion.apache.org/. Last visited: Dec. 5th, 2019.Search in Google Scholar
22. VideoViewer-extension Website. URL https://github.com/TIBHannover/ckanext-videoviewer. Last visited: Dec. 5th, 2019.Search in Google Scholar
23. VTK.js Javascript Framework Website. URL https://kitware.github.io/vtk-js/index.html. Last visited: Dec. 5th, 2019.Search in Google Scholar
24. Zenodo Website. URL https://zenodo.org/. Last visited: Dec. 5th, 2019.Search in Google Scholar
25. J. Aldridge, J. Medina, and R. Ralphs. The problem of proliferation: Guidelines for improving the security of qualitative data in a digital age. Research Ethics, 6(1): 3–9, March 2010. doi: 10.1177/174701611000600102.Search in Google Scholar
26. R. C. Amorim, J. A. Castro, J. R. da Silva, and C. Ribeiro. A comparison of research data management platforms: architecture, flexible metadata and interoperability. Universal Access in the Information Society, 16(4): 851–862, June 2016. doi: 10.1007/s10209-016-0475-y.Search in Google Scholar
27. K. Briney. Data Management for Researchers: Organize, maintain and share your data for research success. Pelagic Publishing Ltd, 2015.Search in Google Scholar
28. I. Budin-Ljøsne, J. Isaeva, B. M. Knoppers, et al. Data sharing in large research consortia: experiences and recommendations from ENGAGE. European Journal of Human Genetics, 22 (3): 317–321, June 2013. doi: 10.1038/ejhg.2013.131.Search in Google Scholar PubMed PubMed Central
29. J. Carlson. Demystifying the data interview. Reference Services Review, 40 (1): 7–23, February 2012. doi: 10.1108/00907321211203603.Search in Google Scholar
30. B. Custers, F. Dechesne, A. M. Sears, T. Tani, and S. van der Hof. A comparison of data protection legislation and policies across the EU. Computer Law & Security Review, 34(2): 234–243, April 2018. doi: 10.1016/j.clsr.2017.09.001.Search in Google Scholar
31. T. De Nies, S. Magliacane, R. Verborgh, et al. Git2prov: Exposing version control system content as w3c prov. In International Semantic Web Conference (Posters & Demos), pages 125–128, 2013.Search in Google Scholar
32. L. M. Federer, Y.-L. Lu, D. J. Joubert, J. Welsh, and B. Brandys. Biomedical data sharing and reuse: Attitudes and practices of clinical and scientific research staff. PLOS ONE, 10(6): e0129506, June 2015. doi: 10.1371/journal.pone.0129506.Search in Google Scholar PubMed PubMed Central
33. P. C. Griffin, J. Khadake, K. S. LeMay, et al. Best practice data life cycle approaches for the life sciences. F1000Research, 6: 1618, June 2018. doi: 10.12688/f1000research.12344.2.Search in Google Scholar PubMed PubMed Central
34. B. Hanson, A. Sugden, and B. Alberts. Making data maximally available. Science, 331 (6018): 649, February 2011. doi: 10.1126/science.1203354.Search in Google Scholar PubMed
35. D. S. Katz, K. E. Niemeyer, Arfon M. Smith, et al. Software vs. data in the context of citation. Technical report, PeerJ Preprints, 2016.10.7287/peerj.preprints.2630v1Search in Google Scholar
36. F. Krüger and S. Spors. A questionnaire to estimate the needs for research data management, 2018. doi: 10.18453/rosdok_id00002290.Search in Google Scholar
37. D. Merkel. Docker: lightweight linux containers for consistent development and deployment. Linux Journal, 2014 (239): 2, 2014.Search in Google Scholar
38. L. Moreau, P. Groth, J. Cheney, et al. The rationale of PROV. Journal of Web Semantics, 35: 235–257, December 2015. doi: 10.1016/j.websem.2015.04.001.Search in Google Scholar
39. Michalis Mountantonakis and Yannis Tzitzikas. Large-scale semantic integration of linked data. ACM Computing Surveys, 52 (5): 1–40, Sep 2019. doi: 10.1145/3345551.Search in Google Scholar
40. H. Raben, P. W. Kämmerer, R. Bader, and U. van Rienen. Establishment of a numerical model to design an electro-stimulating system for a porcine mandibular critical size defect. Applied Sciences, 9 (10): 2160, May 2019. doi: 10.3390/app9102160.Search in Google Scholar
41. M. Schröder, F. Krüger, R. Zepf, U. van Rienen, and S. Spors. A Comprehensive Approach to Support Research Processes in the CRC 1270 ELAINE. In WissKom2019, Jülich, Germany, June 2019.Search in Google Scholar
42. C. Tenopir, S. Allard, K. Douglass, et al. Data sharing by scientists: Practices and perceptions. PLoS ONE, 6(6): e21101, June 2011. doi: 10.1371/journal.pone.0021101.Search in Google Scholar PubMed PubMed Central
43. M. D. Wilkinson, M. Dumontier, I. J. Aalbersberg, et al. The FAIR guiding principles for scientific data management and stewardship. Scientific Data, 3: 160018, March 2016. doi: 10.1038/sdata.2016.18.Search in Google Scholar PubMed PubMed Central
44. J. Winn. Open data and the academy: An evaluation of ckan for research data management. Technical report, University of Lincoln, 2013. URL http://eprints.lincoln.ac.uk/9778/1/CKANEvaluation.pdf.Search in Google Scholar
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