Skip to main content

Single-Cell PCR Methods for Studying Stem Cells and Progenitors

  • Protocol
Embryonic Stem Cells

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 185))

Abstract

Knowledge of the molecular and cellular events characterizing osteoblast development is growing as new markers, including important classes of regulatory molecules such as transcription factors (e.g., Cbfa-1 [1]), are elucidated. Nevertheless, a paucity of definitive and specific markers, especially for the more primitive progenitors and the hemopoietic lineages (2). One useful model, however, has been culture of mixed populations of freshly isolated cells derived from a variety of bones (e.g., 21-d fetal rat calvaria [RC]) or bone marrow stroma under conditions that favor osteoblast development (2). For example, when such heterogeneous primary cultures are grown long-term (approx 3 wk) in medium supplemented with ascorbic acid and α-glycerophosphate, a low frequency (about 0.00001–1% of unfractionated freshly isolated populations) of osteoprogenitor cells present divide and differentiate to form 3-dimensional mineralized bone nodules (3,4). These infrequent cells comprise the colony forming units or colony forming cells-osteoprogenitor (CFU-Os or CFC-Os, respectively) in populations from the whole tissue and appear analogous to the nonstem cell CFU/CFCs in lineages such as the hemopoietic. Notably, the frequency of such cells can be determined by limiting dilution, and they appear to have limited capacity for self-renewal (3,4). On the other hand, morphological, immunohistochemical, and molecular analyses have confirmed that differentiation of CFU-Os and formation of bone nodules reproducibly recapitulates a proliferation-differentiation sequence from an early precursor cell to a mature osteoblast (2).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Ducy, P. (2000) CBFA1: a molecular switch in osteoblast biology. Dev. Dyn. 219, 461–471.

    Article  PubMed  CAS  Google Scholar 

  2. Aubin, J. E. (1998) Bone stem cells. 25th Anniversary Issue: new directions and dimensions in cellular biochemistry. Invited chapter. J. Cell Biochem. Suppl. 30/31, 73–82.

    Google Scholar 

  3. Bellows, C. G. and Aubin, J. E. (1989) Determination of numbers of osteoprogenitors present in isolated fetal rat calvaria cells in vitro. Dev. Biol. 133, 8–13.

    Article  PubMed  CAS  Google Scholar 

  4. Aubin, J. E. (1999) Osteoprogenitor cell frequency in rat bone marrow stromal cell populations: role for heterotypic cell-cell interactions in osteoblast differentiation. J. Cell Biochem. 72, 396–410.

    Article  PubMed  CAS  Google Scholar 

  5. Brady, G., Barbara, M., and Iscove, N. N. (1990) Representative in vitro cDNA amplification from individual hemopoietic cells and colonies. Methods Mol. Cell Biol. 2, 17–25.

    CAS  Google Scholar 

  6. Brady, G. and Iscove, N. N. (1993) Construction of cDNA libraries from single cells. Methods Enzymol. 225, 611–623.

    Article  PubMed  CAS  Google Scholar 

  7. Liu, F., Malaval, L., Gupta, A., and Aubin, J. E. (1994) Simultaneous detection of multiple bone-related mRNAs and protein expression during osteoblast differentiation: polymerase chain reaction and immunocytochemical studies at the single cell level. Dev. Biol. 166, 220–234.

    Article  PubMed  CAS  Google Scholar 

  8. Liu, F., Malaval, L., and Aubin, J. E. (1997) The mature osteoblast phenotype is characterized by extensive palsticity. Exp. Cell Res. 232, 97–105.

    Article  PubMed  CAS  Google Scholar 

  9. Brady, G., Billia, F., Knox, J., Hoang, T., Kirsch, I. R., Voura, E., et al. (1995) Analysis of gene expression in a complex differentiation hierarchy by global amplification of cDNA from single cells. Curr. Biol. 5, 909–922.

    Article  PubMed  CAS  Google Scholar 

  10. Cheng, T., Shen, H., Giokas, D., Gere, J., Tenen, D. G., and Scadden, D. T. (1996) Temporal mapping of gene expression levels during the differentiation of individual primary hematopoietic cells. Proc. Nat. Acad. Sci. USA 93, 13,158–13,163.

    Article  PubMed  CAS  Google Scholar 

  11. Cumano, A., Paige, C. J., Iscove, N. N., and Brady, G. (1992) Bipotential precursors of B cells and macrophages in murine fetal liver. Nature 356, 612–615.

    Article  PubMed  CAS  Google Scholar 

  12. Billia, F., Barbara, M., McEwen, J., Trevisan, M., and Iscove, N. N. (2001) Resolution of pluripotential intermediates in murine hematopoietic differentiation by global complementary DNA amplification from single cells: Confirmation of assignments by expression profiling of cytokine receptor transcripts. Blood 97, 2257–2268.

    Article  PubMed  CAS  Google Scholar 

  13. Trumper, L. H., Brady, G., Bagg, A., Gray, D., Loke, S. L., Griesser, H., et al. (1993) Single-cell analysis of Hodgkin and Reed-Sternberg cells: molecular heterogeneity of gene expression and p53 mutations. Blood 81, 3097–3115.

    PubMed  CAS  Google Scholar 

  14. Kennedy, M., Firpo, M., Choi, K., Wall, C., Robertson, S., Kabrun, N., and Keller, G. (1997) A common precursor for primitive erythropoiesis and definitive haematopoiesis. Nature 386, 488–493.

    Article  PubMed  CAS  Google Scholar 

  15. Robertson, S. M., Kennedy, M., Shannon, J. M., and Keller, G. (2000) A transitional stage in the commitment of mesoderm to hematopoiesis requiring the transcription factor SCL/tal-1. Development 127, 2447–2459

    PubMed  CAS  Google Scholar 

  16. Emmert-Buck, M. R., Bonner, R. F., Smith, P. D., Chuaqui, R. F., Zhuang, Z., Goldstein, S. R., et al. (1996) Laser capture microdissection. Science 274, 998–1001.

    Article  PubMed  CAS  Google Scholar 

  17. Raetz, C. R., Wermuth, M. M., McIntyre, T. M., Esko, J. D., and Wing, D. C. (1982) Somatic cell cloning in polyester stacks. Proc. Natl. Acad. Sci. USA 79, 3223–3227.

    Article  PubMed  CAS  Google Scholar 

  18. Esko, J. D. (1989) Replica plating of animal cells. Methods Cell Biol. 32, 387–422.

    Article  PubMed  CAS  Google Scholar 

  19. Jensen, R. A., Page, D. L., and Holt, J. T. (1997) RAP-PCR using RNA from tissue microdissection. Methods Mol. Biol. 85, 277–283.

    PubMed  CAS  Google Scholar 

  20. Candeliere, G. A., Rao, Y., Floh, A., Sandler, S. D., and Aubin, J. E. (1999) cDNA fingerprinting of osteoprogenitor cells to isolate differentiation stage-specific genes. Nucleic Acids Res. 27, 1079–1083.

    Article  PubMed  CAS  Google Scholar 

  21. McClelland, M., Arensdorf, H., Cheng, R. and Welsh, J. (1994) Arbitrarily primed PCR fingerprints resolved on SSCP gels. Nucleic Acids Res. 22, 1770–1771.

    Article  PubMed  CAS  Google Scholar 

  22. Liang, P. and Pardee, A. B. (1998) Differential display. A general protocol. Mol. Biotechnol. 10, 261–267.

    Article  PubMed  CAS  Google Scholar 

  23. Brail, L. H., Jang, A., Billia, F., Iscove, N. N., Klamut, H. J., and Hill, R. P. (1999) Gene expression in individual cells: analysis using global single cell reverse transcription polymerase chain reaction (GSC RT-PCR). Mutat. Res. 406, 45–54.

    PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2002 Humana Press Inc., Totowa, NJ

About this protocol

Cite this protocol

Aubin, J.E., Liu, F., Candeliere, G.A. (2002). Single-Cell PCR Methods for Studying Stem Cells and Progenitors. In: Turksen, K. (eds) Embryonic Stem Cells. Methods in Molecular Biology™, vol 185. Springer, Totowa, NJ. https://doi.org/10.1385/1-59259-241-4:403

Download citation

  • DOI: https://doi.org/10.1385/1-59259-241-4:403

  • Publisher Name: Springer, Totowa, NJ

  • Print ISBN: 978-0-89603-881-3

  • Online ISBN: 978-1-59259-241-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics