http://orcid.org/0000-0003-0287-5567
Figures
Abstract
The hyline tribe Lophyohylini includes 87 species of treefrogs, of which cytogenetics aspects have been studied in less than 20% of them. In order to evaluate the evolution of some of its chromosome characters (NOR position, C-bands, and DAPI/CMA3 bands), we studied the karyotypes of 21 lophyohylines, 16 of them for the first time, and analyzed them in a phylogenetic context. Most species showed similar karyotypes regarding chromosome number (2n = 24) and morphology (FN = 48), excepting Phyllodytes edelmoi and Osteocephalus buckleyi with 2n = 22 (FN = 44) and 2n = 28 (FN = 50), respectively. The NOR location was variable among species and provided valuable phylogenetic information. This marker was located in pair 11 in all species of Trachycephalus, Itapotihyla langsdorffii, and Nyctimantis arapapa, representing the plesiomorphic condition of Lophyohylini. Besides, other apomorphic states were recovered for the clades comprising N. rugiceps and N. siemersi (NOR in pair 5), and Dryaderces pearsoni, Osteocephalus, and Osteopilus (NOR in pair 9). Phyllodytes presented variation for NORs position; they were in pair 2 in P. edelmoi, pair 7 in P. melanomystax, and pair 8 in P. gyrinaethes and P. praeceptor. Polymorphisms in size, number, and activity of this marker were observed for N. siemersi, Osteocephalus fuscifacies, and some species of Trachycephalus. Remarkably, in N. siemersi NORs were detected on a single chromosome in the two specimens studied by this technique, raising the question of how this complex polymorphism is maintained. Interstitial telomeric sequences were found in P. edelmoi, P. melanomystax, and Osteocephalus buckleyi, and their presence seems to be not related to the chromosome reorganization events. Finally, some species showed spontaneous rearrangements, possibly as a consequence of an uncommon phenomenon in anuran cytogenetics: the presence of fragile sites or secondary constrictions not associated with NORs. We propose that this rare feature would have played an important role in the evolution of this group of frogs. From the evidence obtained in this and previous studies, we conclude that Lophyohylini presents a complex chromosome evolution.
Citation: Suárez P, Ferro JM, Nagamachi CY, Cardozo DE, Blasco-Zúñiga A, Silva JB, et al. (2020) Chromosome evolution in Lophyohylini (Amphibia, Anura, Hylinae). PLoS ONE 15(6): e0234331. https://doi.org/10.1371/journal.pone.0234331
Editor: Matthias Stöck, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, GERMANY
Received: January 16, 2020; Accepted: May 22, 2020; Published: June 11, 2020
Copyright: © 2020 Suárez et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: All relevant data are within the manuscript and its Supporting Information files.
Funding: JMF is grateful to the Universidad Nacional de Misiones (16Q001-TI). DB and JF thanks Agencia Nacional de Promoción Científica y Tecnológica (PICTs 2013-404, 2015-820, 2015-2381, PICT 2018-3349). CYN and JCP aknowledge Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), the Fundação Amazônia Paraense de Amparo à Pesquisa (FAPESPA) and the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) on projects coordinated by CY Nagamachi (Edital BIONORTE-CNPq, Proc 552032/2010-7; Edital BIONORTE-FAPESPA, ICAAF 007/2011; Edital Pró-Amazônia Proc 047/2012); the FAPESPA (Edital Vale – Proc 2010/110447) and Banco Nacional de Desenvolvimento Econômico e Social – BNDES (Operação 2.318.697.0001) on a project coordinated by JC Pieczarka. ABZ y MR appreciate the partial financing of this research by Research Directory of the Pontificia Universidad Católica del Ecuador project code QINV0046 - IINV529010100. EMJ thanks Fundação de Amparo à Pesquisa da Bahia - FAPESB (#8952/2014) for the doctoral grant, Fundação de Amparo à Pesquisa e Inovação do Espírito Santo - FAPES (Processo 78252482) for post doctoral Grant and Rede Baiana de Pesquisas sobre Anfíbios for partially funding this project. IJR thanks Coordenação de Aperfeiçoamento de Pessoal de Nível Superior—Brasil (CAPES)—Finance code 001 doctoral fellowship (88882.156872/2016-01). VGDO was supported with a CNPq fellow (#310467/2017-9)
Competing interests: The authors have declared that no competing interests exist.
Introduction
Treefrogs of the subfamily Hylinae are essential components of Neotropical anuran diversity, currently comprising 724 species [1], arranged in seven tribes [2]: Cophomantini, Dendropsophini, Hylini, Lophyohylini, Pseudini, Scinaxini, and Sphaenorhynchini. Lophyohylini consists of 87 species that are widely distributed in Middle and South America [1, 3]. The monophyly of this tribe is well supported, mostly by molecular characters [3–11]. Blotto et al. [3] recently performed the most inclusive phylogenetic analysis for Lophyohylini and recovered three major clades: (1) An early diverging one composed of Itapotihyla and Phytotriades; (2) A clade including Trachycephalus, closely related to Corythomantis and Nyctimantis (redefined by them to include all species formerly in Aparasphenodon, Argenteohyla and one species of Corythomantis), and (3) A clade composed of Tepuihyla as a sister taxon of Dryaderces and Osteocephalus, plus Osteopilus and Phyllodytes. Although the monophyly of all recognized genera currently in Lophiohylini is well-supported by previous studies, it is not the case for its major clades that are still poorly supported.
Several contributions have studied chromosome evolution in different clades of Hylinae (e.g., [12–17]). More recently, Schmid et al. [18] summarized most cytogenetic information known for Hylidae, further contributing with novel karyotypes for 14 species of Hylinae (2 Cophomantini, 2 Hylini, 2 Scinaxini, and 8 Dendropsophini).
The available chromosomal information for Lophyohylini is very sparse and restricted to only 19% of the included taxa, corresponding to 16 species of 7 genera [19–22]. All studied species have diploid karyotypes, being the most extended haploid number n = 12 [22], proposed as a synapomorphy of Hylinae [4,17].
Among Lophyohylini, the karyotypes of Osteopilus and Phyllodytes are distinctive regarding the haploid number and morphology of chromosomes. Fusion and fission rearrangements, involving the plesiomorphic karyotype, were proposed as possible mechanisms for explaining the variability described in the tribe [19,22]. In Os. wilderi (n = 14) and Os. ocellatus (n = 17), Cole [23] and Anderson [19] reported increments in chromosome number, resulting in the occurrence of two and ten pairs of telocentric chromosomes, respectively. On the other hand, a reduction in chromosome number was observed in Phyllodytes edelmoi and P. luteolus (n = 11, [22]). Interestingly, in the former species, Gruber et al. [22] reported interstitial telomeric sequences or ITS on pairs 1 and 2. Other remarkable features reported in Lophyohylini are the presence of fragile sites or interstitial secondary constrictions that are not associated with NORs in Osteocephalus [19] and conspicuous NORs size heteromorphisms in several species of the genera Corythomantis, Itapotihyla, Nyctimantis, Phyllodytes, and Trachycephalus [21,22].
The main goal of this study was to increase the knowledge about the chromosome evolution of hylids, focusing mainly on Lophyohylini. For this, we surveyed different aspects of the chromosome characters, including the number and morphology of chromosomes, differential banding staining (C-banding, Ag-NORs, DAPI and CMA3 fluorochromes), and mapping of both ribosomal and telomeric DNA repetitive sequences by fluorescence in situ hybridizations. We analyzed the karyotypes of 21 species of Lophyohylini, 16 for the first time. Results were interpreted and discussed based on the most recent and inclusive phylogenetic hypothesis for this tribe [3].
Material and methods
We analyzed karyotypes of 50 specimens of 21 species of Lophyohylini belonging to the genera Dryaderces (D. pearsoni), Itapotihyla (I. langsdorffii), Nyctimantis (N. arapapa, N. rugiceps, and N. siemersi), Osteocephalus (O. buckleyi, O. fuscifacies, O. leprieurii, O. planiceps, O. oophagus, and O. taurinus), Osteopilus (Os. septentrionalis and Os. vastus), Phyllodytes (P. edelmoi, P. gyrinaethes, P. praeceptor, and P. melanomystax), Trachycephalus (T. dibernardoi, T. helioi, T. jordani, and T. typhonius). The collection, euthanization, and preservation of specimens were carried out with the approval of the Ethical Committee in Animal Use (CEUA–permission numbers 002/12 and 014/15 UESC, Ilhéus, BA, Brazil) and the following institutions: Argentina, Administración de Parques Nacionales (APN, PD-187/02); Ministerio de Ecología y Recursos Naturales Renovables (MEyRNR, 048/2013, 072/2014, 061/2015, 073/2016, 035/2017, 047/2018 and 005/2019), Programa de Recursos Naturales y Medio Ambiente (PRNyMA, 01/2016); Brazil, Instituto Chico Mendes de Conservação da Biodiversidade (ICMBio, Sistema de Autorização e Informação em Biodiversidade SISBIO, 12920–3). Ecuador, Ministerio del Ambiente Ecuador 011-2018-IC-FAU-DNB/MA.
The karyotypes of 16 species are studied here for the first time (Dryaderces pearsoni, Nyctimantis arapapa, N. rugiceps, Osteocephalus buckleyi, O. fuscifacies, O. oophagus, O. planiceps, O. leprieurii, O. taurinus, Osteopilus vastus, Phyllodytes gyrinaethes, P. melanomystax, P. praeceptor, Trachycephalus helioi, T. dibernardoi, and T. jordani). Locality data of each specimen and the cytogenetic techniques employed are indicated in Fig 1 and Table 1, respectively. Additional information for each sample is given in the S1 File. For O. taurinus, we followed the phylogenetic hypothesis of Jungfer et al. [11], considering the specimens analyzed in this study as O. taurinus sensu stricto, and those previously studied from French Guiana by Anderson [19] as O. taurinus candidate species 5 [11]. Moreover, because Schmid et al. [18] did not indicate the collecting site of the specimen from Venezuela studied by them, we could not determine the precise taxonomic status of that sample as there occur three candidate species phylogenetically related to O. taurinus in this country (O. taurinus candidate species 2, 3 and 5, [11]).
Santa Fe (SF), Corrientes (CO), Misiones (MI), Bahia (BA), Maceió (MA), Pernambuco (PE), Pará (PA), Morona Santiago (MS), Pastaza (PS), Pichincha (PI). For additional voucher information see the S1 File. The map was created using SimpleMappr (https://www.simplemappr.net), an online tool to produce publication-quality point maps licensed under CC0 1.0 (Public Domain Dedication).
Mitotic chromosome preparations were obtained from bone marrow and intestinal epithelium [24] and stained with 5% buffered Giemsa solution or submitted to differential staining methods. We performed silver staining to detect the location of the active nucleolar organizer regions or Ag-NORs [25] and C-bands to evidence constitutive heterochromatin [26]. Fluorescence in situ hybridization (FISH) was carried out on mitotic preparations following Pinkel et al. [27] protocol: biotin-labeled 18S rDNA probes (BioNick DNA Labeling System, Invitrogen) were detected with avidin-Cy3 or avidin-FITC, and telomeric regions were revealed using all-human telomere digoxigenin-labeled probes (TTAGGG)n (Oncor P4097-DG5), following manufacturer's protocol and detected with anti-dig-FICT (or anti-dig-Cy3). The two base-specific fluorochromes DAPI (4',6-diamino-2-phenylindole) and CMA3 (chromomycin A3) were used following Schweizer and Ambros [28] after denatured preparations with FISH procedure following the modifications of Barros e Silva and Guerra [29]. Chromosomes of Os. septentrionalis and Os. vastus were obtained from cultured lymphocyte cells that were treated with BrdU after Wiley et al. [30] and Wiley and Little [31]. We used the terminology proposed by White [32], considering n as the gametic or haploid chromosome number, 2n as the somatic chromosome number, and FN as the fundamental number (i.e., the total number of chromosome arms per mitotic cell). Because all the karyotyped species in Lophyohylini and almost all Hylidae are diploid, we refer to the gametic number (n) and basic number (x) as equals.
The relative length of mitotic chromosomes and their centromeric index (CI) were obtained using the software Micromeasure 3.3 [33], terming short and long chromosome arms as p and q, respectively. Chromosome morphology was classified as metacentric, submetacentric, subtelocentric, and telocentric, as suggested by Green and Sessions [34].
We optimized the haploid chromosome number and NOR position among the lophyohylines (see the S1 Table for chromosome information in Lophyohylini) on the phylogenetic hypothesis of Blotto et al. [3], following the considerations exposed by Ferro et al. [17]. We considered the character states n = 11, 12, 14, and 17; and NORs in pairs 2, 5, 7, 9, 11, and 17. Optimizations were done with TNT v1.1 [35], considering the states of both characters as unordered transformations.
Results
Most species showed karyotypes with 2n = 24, excepting Phyllodytes edelmoi and Osteocephalus buckleyi that had 2n = 22 and 28, respectively (Fig 2). The morphology of chromosomes of each species is detailed in the S2 Table. In general, karyotypes had a single pair of homologues with NOR sites, in most cases associated with secondary constrictions, always staining CMA3+ (DAPI–) and showing bright hybridization signals with the 18S probe. In all studied species, heterochromatin was remarkably scarce, and C-bands were associated with the NOR sites or had centromeric distribution. In the latter situation, almost all species showed centromeric marks positive for the fluorochrome CMA3 (S1 Fig). See the S1 Table for a summary of cytogenetic information for Lophyohylini.
A. Phyllodytes edelmoi. B. P. gyrinaethes. C. P. praeceptor. D. P. melanomystax. E. Osteocephalus fuscifacies. F. O. taurinus. G. O. oophagus. H. O. leprieurii. I. O. buckleyi. J. O. planiceps. Squares show chromosomes bearing the NORs after silver staining (I) and with FISH using a 18S DNA probe (II).
The ancestral character state reconstruction of both characters, the haploid number and NORs, on the phylogenetic hypothesis of Blotto et al. [3] are shown in Fig 3 and S2 Fig. The haploid chromosome number of n = 12 was recovered as the plesiomorphic state of Lophyohylini and n = 14 is an autapomorphy of Osteopilus wilderi. Besides, a NOR on pair 11 is plesiomorphic for the tribe, whereas NORs on pairs 8 and 9 optimized as synapomorphies of a subclade of Phyllodytes, and the clade including Osteopilus, Phyllodytes, Tepuihyla, Dryaderces, and Osteocephalus, respectively. Other transformations for both characters are discussed below.
For the complete optimizations including all taxa see S2 Fig.
Phyllodytes
Phyllodytes gyrinaethes, P. melanomystax, and P. praeceptor had karyotypes with 2n = 24 (FN = 48), whereas P. edelmoi had 2n = 22 (FN = 44) (Fig 2A–2D). The NOR sites were located distally on pairs 2q in P. edelmoi (Fig 2A), 8q in P. gyrinaethes and P. praeceptor (Fig 2B and 2C), and 7q in P. melanomystax (Fig 2D), corroborated by FISH in P. edelmoi and P. gyrinaethes (Fig 2A and 2B).
C-bands were observed on the centromeres of pairs 2–3, 5, and 7‒11 of Phyllodytes edelmoi (Fig 4A). Fluorescent CMA3+ bands, additional to the NOR sites, were detected in the centromeres of P. edelmoi and P. praeceptor and, in the latter, also on the long arms of pairs 3–4, and 7 (S1 Fig).
A. Phyllodytes edelmoi. B. Osteocephalus taurinus. C. O. oophagus. D. O. leprieurii. E. O. buckleyi.
In the three species studied by FISH with telomeric DNA probe, Phyllodytes edelmoi (Fig 5A), P. melanomystax (Fig 5B), and P. gyrinaethes (S3 Fig), fluorescent signals were detected in the distal region of all chromosomes. Additional interstitial telomeric sites (ITS) were observed in P. edelmoi and P. melanomystax, although varying in the intensity and location of the signals. In P. edelmoi the ITS were present on one arm of pair 1 and both arms of pair 2, whereas in P. melanomystax, conspicuous pericentromeric ITS were only on one arm of chromosomes of pair 1 (Fig 5A and 5B).
Metaphase plates showing ITS detected with FISH with telomeric DNA probe (using FITC fluorochrome). A. Phyllodytes edelmoi. B. Phyllodytes melanomystax. C. Osteocephalus buckleyi. The white arrowheads indicate the ITS. It should be noted that in order to improve the detection of ITS in P. melanomystax, the distal telomeric signals are not visualized in the metaphase shown in (B).
Osteocephalus
Osteocephalus fuscifacies, O. leprieurii, O. oophagus, O. planiceps, and O. taurinus, shared karyotypes with 2n = 24 with all bi-armed chromosomes (FN = 48), while a 2n = 28 was observed in O. buckleyi, with pairs 4, 6, and 7 telocentric (FN = 50) (Fig 2E–2J). The NOR sites were located interstitially on 9q in O. fuscifacies (Fig 2E), O. taurinus (Fig 2F), O. oophagus (Fig 2G), and O. planiceps (Fig 2J), and on pair 11q in O. buckleyi (Fig 2I). In O. fuscifacies, the only specimen studied with Ag-NORs (QCAZ 74202), showed them heteromorphic in size. In O. leprieurii, although it was not possible to detect NORs due to the quality of preparations, conspicuous secondary constrictions were observed in an interstitial position on 9q (Fig 2H).
Osteocephalus leprieurii, O. oophagus, and O. taurinus showed similar patterns of C-bands, characterized by the presence of conspicuous interstitial and telomeric bands on pairs 6p, 8q, 9q, and 12q (Fig 4B–4D). Osteocephalus buckleyi showed C+ bands on all chromosome pairs, with additional telomeric bands on pairs 11q and 13p (Fig 4E). In the karyotypes of the four studied species with the fluorochromes DAPI and CMA3 (O. buckleyi, O. oophagus, O. planiceps, and O. taurinus), centromeres were CMA3+, in addition to NOR sites (S1 Fig).
FISH experiments with the telomeric DNA probes showed distal signals in Osteocephalus planiceps and O. taurinus (S3 Fig), while in O. buckleyi, an additional ITS was detected in the centromeric region of one of the homologues of pair 12 (Fig 5C).
In three metaphase plates of two specimens of Osteocephalus taurinus (2 of 22 cells in PS 430, 1 of 10 cells in PS 467) chromosome variation were detected resulting from spontaneous fission and fusion rearrangements (Fig 6A–6C). One cell showed two additional small chromosome fragments, but it was not possible to identify the chromosome/s involved in this phenomenon, as no gross morphological differences were detected in the karyotype (Fig 6A). In the remaining two cells, on the other hand, chromosome fragments and dicentric chromosomes were observed, in which the latter were formed by rearrangements involving non-homologous chromosomes of pairs 1 and 2 (Fig 6B and 6H), or both homologues of pair 1 (Fig 6C and 6I).
A–C, H, I. Osteocephalus taurinus. D. Nyctimantis siemersi. E. Trachycephalus typhonius. F. Osteopilus vastus. G. Dryaderces pearsoni. Red arrowheads point chromosome fragments (A–D), whereas blue arrowheads indicate the secondary constrictions not associated with the NOR sites (D–G). In (B) and (C), the black arrows show the dicentric chromosomes resulting from spontaneous rearrangements in O. taurinus, and their respective schematic representation is shown in (H) and (I). Inset: partial mitotic metaphase of Os. vastus.
Nyctimantis
All Nyctimantis analyzed shared karyotypes with 2n = 24 (FN = 48). In N. siemersi, the three specimens studied (2♂ and 1♀) had a single secondary constriction pericentromeric on 5q. Ag-NORs were studied in the two male specimens (LGE 11192, 11194) and corroborated by FISH in only one of them, LGE 11192 (Fig 7A). In N. rugiceps the NORs were located pericentromerically on pair 5p (Fig 7B), and in N. arapapa distally on pair 11q (Fig 7C).
A, D. N. siemersi. B, E. N. rugiceps. C, F. N. arapapa. Conventional staining (left) and C-bands (right). The squares show chromosomes carrying NOR sites: I. Ag-NORs, II. FISH with 18S rDNA.
Nyctimantis siemersi showed C-bands in the centromeric and pericentromeric regions of all chromosomes (Fig 7D), with CMA3+ marks on this position (S1 Fig). In N. rugiceps, heterochromatic bands were restricted to the interstitial regions of chromosome pairs 8q and 11q, and the pericentromeric regions of 10p (Fig 7E). Similarly, in this species, fluorescent CMA3+ bands were observed on 5p associated with NORs, and the centromeres (S1 Fig). In N. arapapa, all chromosome pairs showed faint centromeric C-bands (Fig 7F) that were, in addition to the NOR sites, DAPI–/CMA3+ (S1 Fig). In this species, the FISH with the telomeric probe showed positive signals on the distal region of all chromosomes (S3 Fig). In a single cell of one individual of Nyctimantis siemersi (LGE 11194), it was possible to detect a chromosomal break on pair 5q, involving one chromatid at the interstitial region of the NOR sites (Fig 6D).
Trachycephalus
The four analyzed species of this genus had karyotypes with 2n = 24 (FN = 48). The NOR sites were located on 11q, interstitially in Trachycephalus jordani, and distally in T. dibernardoi, T. helioi, and T. typhonius (Fig 8A–8D).
A. Trachycephalus jordani. B. T. helioi. C. T. dibernardoi. D. T. typhonius. E. Itapotihyla langsdorffii. F. Osteopilus septentrionalis. G. Os. vastus. H. Dryaderces pearsoni. Squares show chromosomes bearing the NORs after silver staining (I) and with FISH using a 18S DNA probe (II).
C-bands were mainly distributed on the centromeres of all species (Fig 9A–9D), with additional bands observed distally on chromosome pair 1p in Trachycephalus jordani (Fig 9A), interstitially on 4p and 12q in T. helioi (Fig 9C), and distally and interstitially on pairs 8q and 9q in T. typhonius, respectively (Fig 9D).
A. Trachycephalus jordani. B. T. dibernardoi. C. T. helioi. D. T. typhonius. E. Itapotihyla langsdorffii. F. Osteopilus septentrionalis. G. Os. vastus. H. Dryaderces pearsoni.
Trachycephalus jordani, T. dibernardoi, and T. helioi showed centromeric DAPI–/CMA3+ marks in all chromosomes, whereas in T. dibernardoi the centromeres were also DAPI−but it was not clear a differential pattern for the CMA3 fluorochrome (S1 Fig).
Additional rDNA sites were detected on chromosomes of pairs 2 and 8 in Trachycephalus helioi (Fig 8B) and of pairs 7 and 10 in T. typhonius (Fig 8D), which was observed in one specimen of each species (PS 294 and LGE 18980, respectively). In both cases, the chromosomes involved showed positive signals after FISH but were negative for silver Ag-NOR staining. In T. helioi, bright hybridization 18S signals were present (i) on both chromosomes of pair 2p but differing in their location, interstitially in one of the homologues and pericentromerically in the other; and (ii) pericentromerically on one of the homologues of pair 8p. In T. typhonius, hybridization was observed in only one of the homologues of chromosomes pairs 7q (pericentromerically) and 10q (interstitially).
Another variation regarding the NOR sites was evidenced for the size of Ag-NORs between homologue chromosomes in Trachycephalus jordani, T. dibernardoi, and T. typhonius (Fig 8A, 8C and 8D). In T. dibernardoi and T. typhonius, it was possible to detect triplications and quintuplications respectively in good quality mitotic metaphases stained with Ag-NORs, which was also corroborated by FISH (Fig 8A and 8D). In T. dibernardoi, on the other hand, this technique was not performed in the specimen that showed the heteromorphism.
Finally, in Trachycephalus typhonius pericentromeric secondary constrictions or fragile sites were detected on chromosomes of pair 3q that were not associated with NORs or C-bands (Fig 6E). This feature was found in five specimens of Argentine localities, in both homologues in three samples (homozygosis) or only one chromosome in two of them (heterozygosis).
Itapotihyla langsdorffii
Itapotihyla langsdorffii had a karyotype with 2n = 24 (FN = 48), with NOR sites located pericentromerically on pair 11p (Fig 8E). C-bands were observed on the centromeric regions of all chromosomes and distally on pairs 1–3q (Fig 9E).
Osteopilus
Osteopilus septentrionalis and Os. vastus shared karyotypes with 2n = 24 (FN = 48), with interstitial NOR sites on pair 9q in both species (Fig 8F and 8G).
The two species had similar patterns of C-bands that were restricted to the centromeres, with additional heterochromatin present in Osteopilus septentrionalis distally in the long arm of the largest chromosomes (1–4) (Fig 9F and 9G). DAPI–/CMA3+ fluorescent bands were observed interstitially on Pair 9q in both species, coincident with the NOR sites, in the distal region of most chromosomes of Os. septentrionalis and in all the centromeres in Os. vastus (S1 Fig).
In two specimens of Osteopilus vastus, a conspicuous interstitial secondary constriction not associated with NOR sites were observed on chromosomes 1p (Fig 6F). Curiously, this secondary constriction always involved only one chromatid of such chromosome. In one specimen (Os.5), it was present on both chromosomes 1 in about half of the analyzed cells (14 of 26 cells), whereas in the other specimen (Os.8), this feature was observed only in one chromosome 1 and more infrequently (3 of 48 cells).
Dryaderces pearsoni
This species had a karyotype with 2n = 24 (FN = 48) with NORs located interstitially in pair 9q (Fig 8H). Heterochromatin showed a centromeric pattern, although conspicuous C-bands were observed interstitially on pairs 6p, 8q, 9q, and 12q, and distally on 11q (Fig 9H). The centromeres of almost all chromosomes showed DAPI–/CMA3+ bands, in addition to the NOR sites. Both homologues of pair 12q exhibited an extra interstitial secondary constriction not associated with NORs composed of rich DAPI+/ CMA3– heterochromatin (Fig 6G, S1 Fig).
Discussion
Cytogenetic information available for Lophyohylini currently comprises data on 31 karyotyped species of the 87 species (36%) of the tribe, showing a broad diversity in several chromosomal characters. Different haploid numbers were reported for the tribe, although karyotypes with n = 12 that are composed of all bi-armed chromosomes (FN = 48) are common features present in all studied genera, and represent the plesiomorphic states for n and FN, respectively [18, this study]. Reductions were recorded in Phyllodytes edelmoi and P. luteolus (n = 11, 2n = 22, FN = 44), while the opposite, increments were observed in Osteocephalus buckleyi (n = 14, 2n = 28, FN = 50), Osteopilus wilderi (n = 14, 2n = 28, FN = 52), and Os. ocellatus (n = 17, 2n = 34, FN = 48).
Tepuihyla and the monotypic genus Phytotriades (P. auratus) remain the only two genera of Lophyohylini lacking any cytogenetic information. However, according to different phylogenetic hypotheses available for the tribe [3,6,9], whatever haploid and (or) fundamental numbers are present in these taxa, the plesiomorphic character states for Lophyohylini, n = 12 and FN = 48 remain unchanged.
It was suggested that within Lophyohylini (except Osteocephalus taurinus candidate species 5), there is a remarkable discontinuity in the size of the first 5 chromosome pairs and the remaining 7 [4, 21]. However, this feature is not evident when comparing differences between the size percentage of the haploid set of pairs 5 and 6 in karyotypes of lophyohylines with 2n = 24 (S3 Table).
Interstitial telomeric sequences in Lophyohylini
Interstitial telomeric DNA sequences or ITS is a frequent phenomenon observed in vertebrates, and may be the evolutionary consequence of chromosome rearrangements (e.g., inversions or fusions), but also of a variety of molecular mechanisms involving transposition and amplification of telomeric DNA sequences [24,36,37]. Among anurans, the presence of ITS has been reported in 45 species (see [24,38, for reviews, this study]).
The ITS have rarely been related to taxa that have undergone a process of chromosome reduction. However, it is possible to find this association in a few species of Aplastodiscus and Scarthyla goinorum (Hylidae), and Leptodactylus aff. podicipinus (Leptodactylidae). In Aplastodiscus, two independent reductions changed the plesiomorphic haploid number of n = 12 to n = 11 in the species of the A. albofrenatus group, and to n = 10 and n = 9 in the species of the A. albosignatus group [39–41]. It was stated that the ITS reported in Aplastodiscus may not be directly related to the chromosome reductions observed in the genus [40]. However, it should be noted that ITSs were only detected in species with reduced karyotypes and not in A. perviridis, the only taxon with n = 12 studied by FISH with a telomeric DNA probe. Similarly, Scarthyla goinorum is the only species within Pseudini that has a reduced karyotype (n = 11), in addition to the presence of ITS on chromosomes of pair 3 [15]. Based on these two facts, Suárez et al. [15] proposed that the ITS in this species would be directly related to karyotype reduction. It must be noticed at this point that only one additional species of the tribe with a non-reduced karyotype (n = 12) had been studied by FISH (i.e., Lysapsus laevis). In Leptodactylus sp. aff. podicipinus (n = 10, 2n = 20), ITS are present in the centromeric region of a small pair of chromosomes, but centromeric ITS were also confirmed in L. podicipinus, a phylogenetically related species that shows the plesiomorphic karyotype of Leptodactylidae (n = 11, 2n = 22, [42]).
In 14 species of lophyohylines telomeric DNA was mapped by FISH, and ITS were present in 4 of them: Itapotihyla langsdorffii, Phyllodytes edelmoi, P. melanomystax, and Osteocephalus buckleyi [19,22, this study]. In a similar way to what is observed in almost all other species of anurans, the heterochromatic ITS (het-ITS) pattern observed in the karyotype of I. langsdorffii represents an apomorphic condition, which is probably related to dispersion and amplification mechanisms responsible for the internalization of telomeric-like DNA sequences [22].
Gruber et al. [22] reported ITS in Phyllodytes edelmoi, later described as het-ITSs by Schmid and Steinlein [38] and Schmid et al. [18]. However, it should be mentioned that according to the original description, no C-bands were detected for this species [22]. Indeed, we did not detect for this species positive C-bands apart from those of the centromeres. The similar gross morphology of pairs 1 and 2 between the studied species of Phyllodytes [22, this study] and the presence of ITS in chromosomes of pair 2 in P. melanomystax, suggest that these pairs would not have participated in the karyotype reduction of the genus (from 24 to 22) and that ITS would have an earlier evolutionary origin. Nonetheless, we cannot discard further rearrangements involving these pairs of chromosomes (see NOR sites and their phylogenetic information in Lophyohylini). The absence of ITS signals in P. gyrinaethes provides evidence to propose that the ITS of chromosome pair 2 may represent a putative synapomorphy of an internal clade of Phyllodytes, comprising species with 2n = 22 and 2n = 24. However, a better sampling is necessary since only 5 of 14 species of the genus were karyotyped, and only three of them studied by FISH with telomeric DNA.
Among six studied species of Osteocephalus [19, this study] there is a plesiomorphic karyotype excepting O. buckleyi (n = 14, 2n = 28, FN = 50). Different sources of evidence (i.e., C-bands, NORs, chromosome size, and morphology) provide further support that the six minor pairs are conserved in the clade Osteocephalus + Dryaderces (see below). The presence of pericentromeric ITS on both homologues of pair 13 in O. buckleyi would not be associated with the chromosome reorganization observed in this species, and possibly originated by different mechanisms.
Fragile sites and their possible role in the chromosomal evolution of Lophyohylini
The secondary constrictions or chromosome gaps are usually the consequence of chromosome regions that are associated with the NORs sites, although they can also be formed by constitutive heterochromatin or fragile sites [24]. Fragile sites are defined as specific chromosomal regions that are prone to break and participate in chromosome rearrangements. Unlike anurans, this feature has been extensively studied in humans, and depending on their prevalence in a population, they can be defined as rare or common fragile sites (see [43] for a review).
As in other groups of anurans, the occurrence of spontaneous chromosome rearrangements in natural populations of Hylidae is extraordinarily infrequent and, as far as we know, only two isolated cases have been documented in addition to the present study. Feitosa et al. [44] studied the effects of naturally occurring radiation in the frequency of chromosomal rearrangements in populations of Aplastodiscus perviridis and Boana albopunctata from Morro do Ferro (Minas Gerais, Brazil). Additionally, Anderson [19] described chromosomal abnormalities in the two genera of lophyohylines Osteocephalus and Osteopilus.
In this work, we found variation in several species of Lophyohylini regarding secondary constrictions not associated with NORs in Dryaderces pearsoni, Osteopilus vastus, and Trachycephalus typhonius; spontaneous chromosome rearrangements in Nyctimantis siemersi and Osteocephalus taurinus; and NORs site polymorphisms in N. siemersi and some species of Trachycephalus. Although we did not systematically evaluate this variation because it was not our main objective, the frequency of occurrence of this rearrangement is remarkable compared to other anuran groups and deserves to be discussed.
Anderson [19] highlighted that in specimens of Osteocephalus taurinus candidate species 5 from French Guiana (as O. taurinus), there were fragile interstitial sites in coincidence with heterochromatic regions in medium-sized and small chromosomes (pairs 6 and 9). We could also infer the presence of fragile sites in O. taurinus, by the occurrence of spontaneous rearrangements that generated dicentric chromosomes and chromosome fragments but involving the first two chromosomes pairs. Although almost all interstitial heterochromatic bands previously described by Anderson [19] (inferred from the ideogram figure), were not detected in the present study for O. taurinus, it is tempting to propose that there is co-location between the putative sites where such chromosome breakpoints occurred in O. taurinus and those interstitial heterochromatic bands of O. taurinus candidate species 5.
A chromatid gap or secondary constriction, not associated with NORs or heterochromatin, was observed in two specimens of Osteopilus vastus: present on a single chromatid of only one (heterozygosis) or the two chromosomes of pair 1 (homozygosis). As stated, our cell preparations of Osteopilus were obtained from lymphocyte cultures submitted to a BrdU treatment. Although we do not have an explanation about this rare feature, it is interesting to note that all records in both specimens occurred on precisely the same chromosome region. Under certain conditions, fragile sites can be induced at a low frequency as single chromatid gaps or breaks in cultured cells [43]. Although this could be a possible cause for this extraordinary phenomenon, this was never mentioned in similar studies performing BrdU induction in anurans (e.g., [14,21,22,30,31,45–49]). Interestingly, the remarkable similarity between chromosomes 1 and 2 of Os. ocellatus and Os. wilderi, respectively [18,19,23], resembles the morphology of chromosome 1 of Os. vastus if we consider a chromosome fission at that site, which would suggest that the putative fragile site observed in Os. vastus could have played a role in the chromosomal evolution of the genus.
Almost all species of Osteopilus share the plesiomorphic karyotype number, with the exceptions of Os. wilderi [19] and Os. ocellatus [18,19,23]. The different diploid numbers present in these two species could be explained by the occurrence of translocations involving whole-arms (i.e., Robertsonian translocations), although other rearrangements could play a role in the change of the FN from 48 to 52 observed in Os. wilderi. The phylogenetic relationships of Osteopilus [3,9] suggest independent origins for the changes observed in Os. ocellatus and Os. wilderi. However, it must be noticed that the karyotype of Os. marianae (inferred from the ideogram representation in [19]), differs in chromosome morphology and size from that of other species of the genus with 2n = 24 chromosomes, particularly regarding pairs 4 and 5. It is possible that the karyotype of Os. marianae could have had additional rearrangements that have led to mimic the plesiomorphic state. In this sense, it is essential to study the cytogenetics of Os. crucialis, the sister species of Os. ocellatus, and also perform differential cytogenetic techniques in Os. marianae.
NOR sites and phylogenetic information
Within Lophyohylini, most species show a single pair of NORs located on small pairs of chromosomes with similar morphology [18, this study]. This condition is also present in Cophomantini [17], Scinaxini [13,16], and Hylini [18], suggesting a putative homeology between the chromosomes carrying this marker [13,14]. Moreover, the BrdU replication banding pattern information gathered from different neotropical species of hylids strengthens this hypothesis [21, 49].
Like other groups of Hylidae, the NORs of lophyohylines show interesting variation. First, their presence in chromosomes of pair 11 that is the plesiomorphic condition, observed in almost all species of the major clade comprising Trachycephalus, Corythomantis, and Nyctimantis, which is also shared by the basal monotypic genus Itapotihyla (i.e., I. langsdorffii) [21,22,50, this study]; in this context, it would be the most parsimonious condition expected for its sister taxon Phytotriades auratus. In Nyctimantis, there are two patterns for the chromosome location of the NORs. In N. arapapa, N. bokermanni, and N. brunoi, they are terminal on pair 11q (as pair 10 in [21,22], this study), whereas in N. siemersi and N. rugiceps they are pericentromeric on chromosome pair 5 [20, this study]. The NORs on pair 5 observed in N. rugiceps and N. siemersi, would likely have a common origin and are a putative synapomorphy of a less inclusive clade within Nyctimantis that includes these species. The differences in the intrachromosomal position of this marker between them, on 5p and 5q respectively, would possibly be the consequence of subsequent modifications (e.g., pericentric inversion). Indeed, this assumption is not unreasonable since both taxa are closely related according to several phylogenetic studies [3,6–9,51,52]. However, to test this hypothesis, it is still necessary to study N. galeata and N. pombali included in this clade, and are most closely related to N. rugiceps.
Three genera of the clade composed of Tepuihyla, Osteocephalus, Dryaderces, Osteopilus, and Phyllodytes [3] share NOR sites localized interstitially on a small-sized metacentric pair of chromosomes (i.e., pair 9 [19, this study]), differing significantly in size from the pair 11 observed in other lophyohylines. The NORs on pair 9 are found in species of Osteocephalus (O. taurinus candidate species 5, O. taurinus, O. oophagus, O. planiceps, and O. leprieurii inferred in this study by the presence of secondary constrictions), Dryaderces (D. pearsoni), and Osteopilus (Os. dominicensis, Os. septentrionalis, and Os. vastus). Similarly, in Osteocephalus buckleyi and Os. wilderi, despite having a higher number of chromosomes and NORs on pairs 11 and 9, respectively [19, this study], the similarity between the chromosomes carrying NORs in these species and those with 2n = 24 also suggest homeology of these elements. In this way, NORs on pair 9 represents a putative synapomorphy of this poorly supported clade and remains to be studied in Tepuihyla. Moreover, an interstitial C-band on pair 8 in the species of Osteocephalus, including the observations in O. buckleyi (on pair 10), and in Dryaderces pearsoni [19, this study], represents a putative synapomorphy for Dryaderces + Osteocephalus.
The NORs occur on pair 2 in Phyllodytes edelmoi and P. luteolus [22, this study], pair 7 in P. melanomystax, and pair 8 in P. gyrinaethes and P. praeceptor (this study). This variation and additional chromosomal differences (i.e., the morphology of pairs 4, 6, and 7) suggest that cytogenetics is a promising source of information for the systematics of Phyllodytes; however, its phylogenetic interpretation is sharply limited by the still sparse and scattered cytogenetic sampling of the genus.
Polymorphisms for the NOR sites in Lophyohylini
In anurans, polymorphisms for the location and size of the NORs are frequent, and in about half of the reported cases have been observed with in situ detection with rDNA in addition to Ag-NOR staining [24,30,39,50,53–65]. This marker was studied in almost all lophyohylines showing an impressive variation (S1 Table).
In Osteopilus septentrionalis, intra and interchromosomal differences of NORs location were reported (i.e., interstitial on 9q), due to paracentric inversions of pair 9 and to a reciprocal translocation in heterozygosis involving pairs 6 and 9, respectively [19]. Although such variation was not observed in other studies [18,23,66, this study], in the figures provided by Schmid [66] and Schmid et al. [18] for this species (Fig 8C and 571, respectively), the Ag-NORs marks are located in a pericentromeric position. Moreover, multiple Ag-NORs were described in Os. ocellatus [18,19], supporting the idea that the NORs in Osteopilus are highly variable.
Morand and Hernando [20] studied the Ag-NORs in three females of Nyctimantis siemersi, reporting that 60% of the cells had NORs on one or two chromosomes of pair 5, while the remaining 40% had them interstitially on one homologue of pair 1. In our study, Ag-NORs were observed in only one chromosome of pair 5 in two males, corroborated by FISH in one of them, and inferred by the presence of remarkable secondary constriction in a female. A similar feature was reported in the lophyohylines Corythomantis greeningi and Nyctimantis brunoi, although, in these species, the occurrence of a single Ag-NORs was rejected by FISH [21]. The complete deletion of the NOR sites, as it is observed in N. siemersi, is infrequent among anurans ([66]; see [24] for a review), being difficult to understand its high prevalence without a sex association.
In Trachycephalus, four species show conspicuous secondary constrictions associated with Ag-NORs: T. dibernardoi, T. cunauaru (as Trachycephalus sp. in [18,22]), T. jordani, and T. typhonius, which was additionally confirmed by FISH in the last two species [22, this study]. Heteromorphisms for the size of the NORs were observed in other species of lophyohylines: Corythomantis greeningi, Itapotihyla langsdorffii, Nyctimantis bokermanni, Osteocephalus fuscifacies, and P. luteolus [21, this study]. Indeed, the occurrence of variable size between homologs carrying the NOR sites is commonly reported, where unequal crossing between homologues during the first meiotic prophase would change the position of rDNA clusters forming tandem multiplications [66,67].
Finally, the lack of silver impregnation affinity in rDNA positive signals after FISH was confirmed in this study in the two species of Trachycephalus, T. helioi and T. typhonius, denoting that were transcriptionally inactivated (see [24] for a review). The presence of polymorphic silent NOR sites in Anura is an infrequent feature described only in Craugastor fitzingeri [24], Hyla chrysoscelis, H. versicolor [30], and Scinax tripui [65]. Although this could be the consequence of sampling bias, as the FISH technique is not routinely used on several specimens to establish a correspondence between the Ag-NOR bands and rDNA sites. Because this feature has so far been poorly studied in this group, it is still premature to draw conclusions about the presence and the position of silenced rDNA sites.
Conclusions
Among vertebrates, the chromosome evolution of anurans has traditionally been considered to be stable due to the apparent high conservatism of karyotypes of several taxa. However, the recent discovery of significant variation, particularly regarding spontaneous numerical and structural alterations, has started challenging this idea. For instance, Schmid et al. [24,68] described unprecedented rates of spontaneous chromosomal anomalies in several species of direct-developing frogs of the family Hemiphractidae, and particularly of the brachycephaloid families Craugastoridae and Eleutherodactylidae, reaching frequencies of 0.7%, 10%, and 15% respectively. In the present study, Lophyohylini shows a complex chromosome evolution as well, which has led to complex karyotypic changes (Osteopilus, Osteocephalus, and Phyllodytes). The high rate of rearrangements observed in lophyohylines represents reliable evidence that fissions and reciprocal translocations would be one of the leading candidate mechanisms responsible for the increase of the 2n and FN found in Osteopilus and Osteocephalus.
Besides, Lophyohylini exhibits other interesting chromosomal variations not solely restricted to the number, size, and the activity of NORs or the occurrence of ITS, but related to the presence of chromosomal rearrangements and the intriguing fragile sites. The latter likely presents a still unreported diversity, since no clear pattern is evident, as they can vary in the content of heterochromatin or type. For instance, being DAPI+/CMA3– in Dryaderces pearsoni, DAPI–/CMA3+ in Nyctimantis siemersi, neutral for both fluorochromes in Trachycephalus typhonius, or even can vary intrachromosomally as in Osteopilus vastus. The fluorochrome CMA3 is another promising character that has shown a centromeric CMA3+ pattern on almost all studied species of the tribe, excepting Os. septentrionalis, Phyllodytes melanomystax, P. praeceptor, and T. dibernardoi.
In a broad sense, regarding the reported cytogenetic variation, Lophyohylini resembles what is observed in direct-developing frogs of Brachycephaloidea and Hemiphractidae. Further studies in Phytotriades and Tepuihyla and an expanded sampling in the variable genus Phyllodytes would help to understand the puzzling cytogenetics of these intriguing frogs.
Supporting information
S1 Fig. DAPI and CMA3 staining in 16 species of Lophyohylini.
https://doi.org/10.1371/journal.pone.0234331.s001
(PDF)
S2 Fig. Optimization of the haploid number (n) and the position of NORs (NORs) in Lophyohylini on the phylogenetic hypothesis of Blotto et al. [3].
https://doi.org/10.1371/journal.pone.0234331.s002
(PDF)
S3 Fig. Telomeric sequences in four species of Lophyohylini.
A. Phyllodytes gyrinaethes. B. Osteocephalus planiceps. C. O. taurinus. D. Nyctimantis arapapa
https://doi.org/10.1371/journal.pone.0234331.s003
(PDF)
S1 File. Information of the specimens analyzed of each species.
https://doi.org/10.1371/journal.pone.0234331.s004
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S1 Table. Cytogenetic information in Lophyohylini.
Differential techniques performed, chromosome number (2n) and NORs position observed in each species.
https://doi.org/10.1371/journal.pone.0234331.s005
(PDF)
S2 Table. Chromosome measurements of 21 species of Lophyohylini.
Chromosome percentage relative to the haploid set (Chromosome Morphology) Centromeric Index ± Standard Deviation. m: metacentric; sm: submetacentric; st: subtelocentric; t: telocentric.
https://doi.org/10.1371/journal.pone.0234331.s006
(PDF)
S3 Table. Comparison of measures of pairs 5 and 6 between different species of Lophyohylini.
https://doi.org/10.1371/journal.pone.0234331.s007
(PDF)
Acknowledgments
PS, JMF, DC, JF, and DB thank the Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET). PS, JMF, DC, and DB also thank the Universidad Nacional de Misiones (UNaM). CYN and JCP are grateful to the Universidade Federal do Pará. We thank J.M. Boeris for helping in the collection of some specimens from Argentina. CYN, VGDO, and JCP to Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq). ABZ, MR acknowledge to Santiago Ron (Museo de Zoología QCAZ) and Andrés Merino (Balsa de los Sapos project from PUCE) for providing specimens and for species identification. TNT was provided free by the Willi Hennig Society.
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