Mapping the Small RNA Content of Simian Immunodeficiency Virions (SIV)
Figure 6
INUs were mapped on human small ILF3/NF90-associated RNA A14 (SNAR-A14, Acc. no. NR_24242.1). INUs for fragments derived from SIV-virion containing (red, left y-axis) or mock-treated cell culture supernatants (blue, right y-axis) are plotted along the primary sequence. The most abundant fragments are shown together with their relative position and the number of identical reads in bold. Secondary structure of snaR-A14, that was predicted with RNAfold [33], is given above. The annotation of A-Box and B-Box is according to [38]. Note that this sequence is identical in SNAR-A3, A4, A5, A6, A7, A8, A9, A10 and A11.