Polygenic Modeling with Bayesian Sparse Linear Mixed Models
Figure 4
Comparison of prediction performance of several models with BSLMM for three traits in the heterogenous stock mouse dataset.
Performance is measured by RMSE difference with respect to BSLMM, where a positive value indicates worse performance than BSLMM. The x-axis shows two different ways to split the data into a training set and a test set, each with 20 replicates. The mean RMSE of BSLMM for the six cases are 0.70, 0.80, 0.79, 0.90, 0.98 and 0.99, respectively.