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Extracellular electron transfer from cathode to microbes: application for biofuel production

Biotechnology for Biofuels volume 9, Article number: 11 (2016) Cite this article

Abstract

Extracellular electron transfer in microorganisms has been applied for bioelectrochemical synthesis utilizing microbes to catalyze anodic and/or cathodic biochemical reactions. Anodic reactions (electron transfer from microbe to anode) are used for current production and cathodic reactions (electron transfer from cathode to microbe) have recently been applied for current consumption for valuable biochemical production. The extensively studied exoelectrogenic bacteria Shewanella and Geobacter showed that both directions for electron transfer would be possible. It was proposed that gram-positive bacteria, in the absence of cytochrome C, would accept electrons using a cascade of membrane-bound complexes such as membrane-bound Fe-S proteins, oxidoreductase, and periplasmic enzymes. Modification of the cathode with the addition of positive charged species such as chitosan or with an increase of the interfacial area using a porous three-dimensional scaffold electrode led to increased current consumption. The extracellular electron transfer from the cathode to the microbe could catalyze various bioelectrochemical reductions. Electrofermentation used electrons from the cathode as reducing power to produce more reduced compounds such as alcohols than acids, shifting the metabolic pathway. Electrofuel could be generated through artificial photosynthesis using electrical energy instead of solar energy in the process of carbon fixation.

Background

An eventual replacement of fossil energy source with sustainable energy system is unavoidable. Biofuels have emerged as one of the sustainable fuels sources and it is considered as alternatives to petroleum. Biomass captured the energy from sunlight and stored it as high-energy chemical bonds, which is used for biofuels. More recently, electrofuels have been studied for liquid fuels as a means for intermittent electricity storage [1] using the energy of low-potential electrons such as hydrogen gas, reduced metal, or electricity [2]. It usually uses the interaction between microbes and electrode, through extracellular electron transfer.

Bioelectrochemical synthesis (BES) uses extracellular electron transfer of microorganisms catalyzing anodic and/or cathodic reactions. BES has two categories according to the direction of electron flow, microbial fuel cells (MFC, electricity production), and microbial electrosynthesis (MES, electricity consumption). A microbial fuel cell uses extracellular electron transfer to an electrode originating from organic compounds consumed by microorganisms. Microbial electrosynthesis uses electron transfer from an electrode to microorganisms producing reduced biochemical compounds. An electrode is thus used as an electron acceptor (MFC) or an electron donor (MES).

Extracellular electron transfer has been gaining wide interest in relation to microbial electrochemical synthesis [1, 3], interspecies electron transfer [4, 5], and microbial immobilization of heavy metals for bioremediation [6, 7] (Table 1). In particular, biofuels or biochemicals are reduced compounds and the reducing power is needed in microbial fermentation processes [8, 9]. An external supply of electrons using electricity enhances the reducing process in microbial metabolism. Direct electron transfer is ideal in extracellular electron transfer from a cathode to microbes.

Table 1 The application of bioelectrochemical reduction
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The two mostly extensively studied microorganisms for extracellular electron transfer are Geobacter and Shewanella species. Geobacter and Shewanella are metal-reducing and gram-negative bacteria. Extracellular electron transfer in microorganisms is used in the metal reduction process by the microorganism and, in this case, the metal is used as an electron acceptor. When metal (hydr)oxides that are poorly soluble in water are present as electron acceptors, extracellular electron transfer occurs using multihaem c-type cytochromes in Geobacter and Shewanella [10]. Based on this phenomenon, the microorganisms are able to extracellularly transfer electrons and this can be applied for BES.

The mode of extracellular electron transfer is broadly divided into the following: (1) direct electron transfer: nanowire [11] or direct contact [12]; (2) mediators-shuttled: endogenous, exogenous as a redox compound or a by-product [13–15]; and (3) extracellular polymeric substances (EPS) of biofilms [16] (Fig. 1).

Fig. 1
figure 1

Cathodic electron transfer mode. Electrons from a cathode flow into a microbe directly, through direct contact, nanowire, and endogenous mediator; or indirectly, through an artificial mediator, by-product, or EPS

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Electron transfer from a cathode to microbes

Multihame c-type cytochrome is a key component of the electron transfer channel in gram-negative bacteria [10]. Filamentous conductive pili are also involved in electron transfer in Shewanella [17] and Geobacter [11]. BES uses two directions, i.e., microbe → electrode (anode) in MFC and electrode (cathode) → microbe in MES, with the same or different mode. Electrons flow from an electron donor with a relatively lower redox potential to an electron acceptor with higher redox potential. In this light, in the present study we address the question that of whether it is possible to use the same electron transport chain for the opposite direction.

The redox tower in Fig. 2 shows the broad range of redox potential for MtrC (located on an extracellular site of the outer membrane), MrtA (a periplasmic c-type cytochrome), CymA (a link point between the inner membrane and the periplasm), and OmcA (anchored in the inner membrane), which were reported to play roles in electron transfer. It is proposed that reversible electron transfer within cytochrome c complex channels is feasible and the same electron transport chain can be used for the opposite direction.

Fig. 2
figure 2

The broad range of redox potential in c-type cytochromes. Considering the possibility of bidirectional electron flow (cathodic, anodic), the broad redox potential suggests the direction of electron flow would be flexible in an electron transfer channel consisting of cytochrome C. The number in a square bracket represents the citation number in the reference list

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Extensively studied in MFC as iron-reducing bacteria, Shewanella oneidensis MR-1 [18] and Geobacter spp. [19] were reported to reduce the highly toxic hexavalent chromium (Cr(VI)) using a cathode. This indicates that both directions for electron transfer would be possible in current-producing bacteria, i.e., microbe → anode and cathode → microbe. However, it was reported that Shewanella showed a reversed Mtr pathway [20] but Geobacter used a different mode in the opposite direction [21].

Direct electron transfer from a cathode to microbes has been observed in a biocathode for microbial communities including betaproteobacteria [22, 23] and firmicutes [22], in addition to Shewanella and Geobacter. The presence of other electroactive, electron endergonic strains thus should be possible. Clostridium pasteurianum increased butanol production using cathode electron transfer without any mediator [24]. Nevertheless, the precise electron transfer channel for acceptance of extracellular electrons has not been verified; the redox enzyme in the membrane, however, may be involved in electrochemical reduction. Ferredoxin extracted from C. pasteurianum previously showed direct electrochemical reduction [25], but there is still no evidence of direct electron transfer through ferredoxin in whole cells. Also, several other redox proteins could be candidates for extracellular electron transfer.

Predicted electron transfer proteins involved in extracellular electron transfer

For direct electron transfer, a membrane-bound redox protein is needed. However, there has been no study of redox proteins involved in direct electron transfer except periplasmic c-type cytochrome. Several studies have reported the possibility of direct electron transfer by microorganisms in the absence of c-type cytochrome, and here we present some possible redox proteins involved in electron transfer channels including cytochromes (Table 2).

Table 2 Predicted electron transfer proteins associated in extracellular electron transfer
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Cytochrome

The heme in cytochrome participates in electron transfer processes. Cell surface-localized cytochromes (OmcE and OmcS in Geobacter sulfurreducens, MtrC and OmcA in Shewanella oneidensis MR-1) are important components for electron transfer [26]. A microarray analysis of G. sulfurreducens gene transcript abundance showed the c-type cytochrome was highly expressed in current-producing biofilms [21]. However, it was suggested that the mechanism of two opposite directions, i.e., microbe → electrode and electrode → microbe, would be significantly different in G. sulfurreducens. Recently, cytochrome PccH with a unusually low redox potential for cytochrome (−24 mV at pH 7) located in the periplasm was proposed as a candidate to provide electron transfer in G. sulfurreducens, even though PccH could not be involved in the first step of accepting electrons [27, 28]. It is meanwhile known that S. oneidensis has a similar mechanism in both directions mainly using flavins (flavin mononucleotide and riboflavin) with cytochrome C [29].

Ferredoxin: membrane-bound complex

Rnf complexes (a membrane-bound NADH:ferredoxin oxidoreductase) are redox-driven ion pumps and have a membrane-bound, proton-translocating ferredoxin: NAD+ oxidoreductase contributing to ATP synthesis (energy conservation) in acetogens such as Clostridium ljungdahlii. RnF is a multifunctional device with nitrogen fixation, proton translocation, and electron transport capabilities [30]. It is four flavin-containing cytoplasmatic multienzyme complexes from clostridia, acetogens, and methanogens [31] and so involved in flavin-based electron bifurcation (FBEB), which is regarded as a third mode of energy conservation in addition to substrate-level phosphorylation (SLP) and electron transport phosphorylation (ETP) [32]. Not all acetogens have rnf genes.

An energy-conserving hydrogenase (Ech) also plays a role in reducing ferredoxin with proton motive force [33]. It involves a coupling mechanism: an exergonic process attributes to coupled endergonic process; ferredoxin reduction with low potential as an exergonic reaction is coupled with H2 or NADH, a high-potential acceptor as endergonic reduction [34]. In methanogens, in the absence of cytochromes, methyltransferase is involved in a exergonic reaction to drive the extrusion of ions (Na+ or H+) across the membrane [35]. In the context energy conservation in a bioelectrochemical system, electron supplementation from cathode would lead to FBEB. Electron bifurcating ferredoxin reduction H+ gradient (for C. ljungdahlii) or Na+ (for Acetobacterium woodii) via membrane-bound Rnf complex was supposed as key components in electron transport chain [36].

Rubredoxin

Rubredoxin (Rub) is also an electron transfer protein having a Fe-S cluster with relatively small molecules (about 55 amino acids) [37, 38]. It is one of the electron transfer components of sulfate-reducing bacteria (SRB) [39] and is also detected in Clostridium pasteurianum [37]. In Desulfovibrio vulgaris, Rub reduces hydrogen peroxide and superoxide [40]. Rub showed an electrochemical response with electrodes [41, 42]. Detailed roles of Rub in microorganisms have not been found but it is expected to be involved in an electron transfer channel.

Hydrogenase and formate dehydrogenase

It was recently reported that a hydrogenase and formate dehydrogenase, which are released from cells, are adsorbed onto electrodes to accept electrons in biocorrosion and bioelectrosynthesis [43]. Methyl viologen-mediated electron transfer to hydrogenase from cathodes and mediatorless H2 production using cathodic electron transfer were previously suggested as electron transfer modes [44]. Formate dehydrogenase also showed direct electron transfer from cathodes [43, 45]. The periplasmic formate dehydrogenase transfers electrons to cytochrome C in D. desulfuricans [46]. The combination of periplasmic enzyme and c-type cytochrome likely provides the electrical wiring [44]. Several membrane-bound enzymes such as fumarate reductase [47, 48] and a denitrification enzyme [49–51] led to bioelectrochemical reduction. Therefore, a periplasmic enzyme could be involved in an electron transfer channel in bioelectrochemical systems.

Electroactive microorganisms

Methanogens and acetogens

The conversion of CO2 to CH4 was reported in a biocathode consisting of a methanogen via direct or indirect (H2 mediator) channels [52–54]. The electron donor for methanogenesis is H2 for autotrophic methanogens or acetate for acetoclastic methanogens. It is supposed that, as in metal-reducing bacteria, the specific electron transfer channel in methanogens plays a role in extracellular electron transfer. Abiotically produced hydrogen is also used by methanogens in indirect electromethanogenesis, instead of direct cathodic electrons [55]. While no electron transfer channel involved in electron transfer from a cathode in methanogens has been identified, energy conservation by bifurcated electron transfer in methanogens could still potentially be found [56].

The study of enzyme purification and protein identification using mass spectroscopy in an acetotrophic methanogen, Methanosarcina acetivorans, showed that ferredoxin reduced membrane-associated multi-heme cytochrome c in Rnf [57, 58]. Methanogens have membrane-associated hydrogenases using ferredoxin or methanophenazine as redox partners [59]. It was reported that hydrogenase and formate dehydrogenase released out of cells mediate electron transfer between a cathode and Methanococcus maripaludis [43]. Also, interspecies electron transfer was shown through flagellum-like appendages between Pelotomaculum thermopropionicum and Methanothermobacter thermoautotrophicus in the form of aggregates [5].

Several acetogenic bacteria (acetate production from CO2 and H2) including Sporomusa ovata, Sporomusa silvacetica, Sporomusa sphaeroides, Clostridium ljungdahlii, Clostridium aceticum, and Moorella thermoacetica consumed electrons from a cathode to reduce CO2 to acetate [60]. Recently, an acetogen closely related with Sporomusa sphaeroides was isolated and showed acetogenic growth using Fe(O) as a sole electron donor [61]. The acetogens Moorella thermoacetica and C. formicoaceticum reduced CO2 to formate, consuming electricity at the cathode compartment [62]. Although the mode of electron transfer to an electroactive acetogen from a cathode is still not known, the membrane-bound cytochromes and cobalt-containing corrinoids were suggested as candidates for an electron transfer channels [63]. Also, cytochrome-b enzymes (membrane-integral b-type cytochromes, −0.215 V vs. SHE) were suggested to be involved in the electron transfer process of acetogens [64].

Metal-oxidizing bacteria and sulfur-utilizing bacteria

The ability of iron-reducing bacteria to give electrons anodes gave rise to the hypothesis that iron-oxidizing bacteria (FeOB) could accept electrons from cathodes in two FeOB, Mariprofundus ferrooxydans and Rhodopseudomonas palustris, in recent studies [65–67] (Fig. 3). The marine isolate Mariprofundus ferrooxydans PV-1 used a cathode as a sole electron donor, generated ATP, and fixed CO2 [67]. Rhodopseudomonas palustris TIE-1 accepted electrons from a cathode, independent of photosynthesis. The dark current indicated extracellular electron uptake uncoupled from the cyclic photosynthetic apparatus and the pioABC operon influenced electron uptake [65]. Rhodopseudomonas palustris TIE-1 increased electron uptake rate 56-fold with unlimited Fe(II) supplementation in a photobioelectrochemical system [67].

Fig. 3
figure 3

Analogy between metal-utilizing bacteria and direct extracellular electron transfer in a bioelectrochemical system. The left side of the dotted line shows the electron flow with metals in metal-utilizing bacteria and the right side indicates interaction with the electrode

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It was reported that isolated marine corrosive delta proteobacterial SRB used elemental iron as the sole electron donor and reduced sulfate, showing the possibility of extracellular electron transfer [68]. Recently, a sulfide-oxidizing bacteria, Desulfobulbaceae, was reported to reduce oxygen in the upper layers of marine sediments using centimeter-long filaments [69]. For removal of H2S, the product of sulfate reduction and a toxic gas to oxygen-consuming organisms, sulfide-oxidizing bacteria used oxygen as an electron acceptor using filaments as electrical cables for H2S oxidation to S [69].

The SRB reduced acetate, butyrate to ethanol, butanol, respectively, using electrons through direct electron transfer from a cathode [70]. It was suggested that the direct electron transfer could take place via a redox enzyme such as cytochrome-b in SRB [70]. The SRB Desulfopila corrodens strain IS4 showed direct electron transfer affecting iron corrosion. Electrochemical and infrared spectroelectrochemical analyses indicated c-type cytochromes were involved in electron transfer [71]. Acidithiobacillus ferrooxidans, Desulfosporosinus orientis, Thiobacillus denitrificans, Sulfurimonas denitrificans, and Desulfovibrio piger also showed electroactivity to accept electrons from a cathode in pure cultures [72].

Cathode modification for enhanced performance of bioelectrochemical reduction

Efforts to improve the efficiency of electron transfer between a cathode and microorganisms have focused on increasing of the interfacial area and interfacial interactions. Nanoparticle attachment on a cathode was attempted with nano-nickel [73], carbon nanotubes [74, 75], conjugated oligoelectrolytes (COEs) [76], and carbon nanotubes on reticulated vitreous carbon (NanoWeb-RVC) [74, 77]. Also, a graphene-modified biocathode enhanced bioelectrochemical production of hydrogen in a MES system [78].

Another attempt involved positively charged surface modification. Extracellular electron transfer from a cathode to a microbe was increased using a positively charged functional group on the surface of a cathode [74]. Negatively charged S. ovate preferred to attach on a cathode and enhanced acceptance of electrons from the cathode for the reduction of CO2 to acetate [74]. The positively charged anode led to an enriched biofilm on an anode but the negatively charged cathode has a repulsive interaction with microorganisms because the cell walls of most bacteria have an overall net negative charge. Therefore, attachment with microorganisms on a cathode has a charge barrier and one study showed that both the zeta potential and the hydrophobicity of cells increased in a current-consuming biofilm [24]. Modification should be tried according to the changes of cell surface characteristics on a cathode, in contrast with on an anode.

Application for valuable biofuel production

A study of the life cycle assessment (LCA) showed MFCs do not give environmental benefit relative to the conventional anaerobic treatment [79]. The development of the MEC system connected with valuable product formation was suggested for positive energy gain [79, 80]. Thus, the product developments using bioelectrochemical reaction between microbe-cathode are promising research directions.

Metabolic shift to reduced compound production (electrofermentation)

Electron transfer via an artificial mediator from a cathode has been applied in several studies and it showed an increase of reduced compound production [15, 81–85]. The distribution of final products would be determined by the electron and carbon flow in the fermentation process. Therefore, it is important to control the electron/carbon flow accordingly for production of the targeted bioproduct. Recently, an increase of butanol production in C. pasteurianum in a bioelectrochemical system showed the reducing power from a cathode could shift the metabolic pathway to solvent production [24]. The supplement of electrons via the cathode into a microbe led to enhanced reduction reaction directly (working on surface-associated redox enzymes, such as hydrogenases and presumably dehydrogenases [43]) or indirectly (increasing a reduced cofactor such as NADH, Fig. 4). The direct reduction process was studied in fumarate reduction to succinate [47], nitrate reduction to nitrite [48], nitrobenzene reduction to aniline [86], and hexavalent chromium reduction [18]. The indirect reduction process includes ethanol production from acetate [81], alcohol formation from glycerol [87], and butyraldehyde to butanol [88].

Fig. 4
figure 4

The microbial metabolic pathway of NADH-consuming compound production. One arrow indicates one step of reaction. The butyrate is NADH-balanced and generally produced more than butanol. The NADH reduction (inset) by electricity increases the flux of electron for butanol formation, more NADH-consuming pathway. \(\varDelta {\text{NADH}}_{\text{net}} \left( {\text{per one mol of product}} \right) = {\text{NADH production}} - {\text{NADH consumption}},\) Fe ox oxidized form of ferredoxin, Fe red reduced form of ferredoxin

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Reduction for value-added bioproducts: chain elongation

The interaction between a cathode and microbes led to reverse β oxidation [89] and reduced propionate (C3) to valerate (C5) in a glycerol-fed bioelectrochemical system [87]. Without fermentable substrates, the reduction of acetate (C2) to caproate (C6) and caprylate (C8) took place in a Clostridium kluyveri-predominant mixed culture in a bioelectrochemical system at −0.9 V vs. NHE cathode potential using in-situ produced hydrogen as an electron donor [90]. The reduction of acetate (C2) and butyrate (C4) into alcohols (C1 ~ C4), acetone (C2) and caproate (C6) occurred in a mixed culture of SRB at a potential of −0.85 V vs. Ag/AgCl via direct electron transfer [70].

The application of a cathode for additional reducing power can improve low-grade chemicals to valuable biofuels with energy supplement through the reduction process of an acid to alcohol or by chain elongation. In particular, landfill leachate, which contains acetate, propionate, and butyrate as main components [91], could be used as feed stocks in bioelectrochemical systems to upgrade waste to value-added biofuels, for examples, acetate to butanol [92] (Fig. 5), glycerol to 1,3-propandiol [93], glucose to polyhydroxyalkanoates (PHA) [92].

Fig. 5
figure 5

The upgrade of waste into value-added biofuels. The acetate from wastes, such as waste activated sludge, food waste, and animal manure, was feed stocks for biofuel production by electroactive microorganisms. The extracellular electron transfer from cathode to microbe via electron transfer protein could be used for the reduction of acetate to butanol. NADH the reduced form, NAD+ the oxidized form of nicotinamide adenine dinucleotide, respectively

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Electrofuel production (CO2 fixation)

Various electron sources can be used as electron donors (organic compounds, H2, H2O, etc.) or acceptors (O2, metal, CO2, etc.) by microbial organisms, whereas humans only use organic carbon as an electron donor and O2 as an electron acceptor. BES uses an electrode as an electron donor (cathode) or an electron acceptor (anode). In particular, electrofuel is a carbon fixation process using a cathode as an electron donor and CO2 as a carbon source, and this process mimics natural photosynthesis in plants [95–97].

$$n{\text{CO}}_{2} + \left( {6n{\,+\,2}} \right)\left( {e^{{{ - }1}} + {\text{H}}^{ + } } \right) \to {\text{C}}_{n} {\text{H}}_{2n + 2} + 2n{\text{H}}_{2} {\text{O}}$$

Electrofuel has several advantages: (1) the CO2 greenhouse gas can be used as a substrate, and the efficiency of the electricity to chemical commodities is relatively high (80 ~ 90 %), i.e., more efficient than photosynthesis; (2) the electricity can be from many renewable sources; and (3) it has good specificity to produce desired chemical commodities. However, research in this ara is an early stage and the final titer is low and the CO2 reduction rate is slow [98].

An acetogen used an electrode as an electron source to produce 2-oxobutyrate as well as acetate [60]. The long-term operation of a bioelectrochemical system with CO2 produced acetate at a level of 10.5 g/L over 20 days [99]. However, the concentration of other carbon compounds was still small, such as butyrate 35 mg/L [100], isobutanol 846 mg/L, and 3-methyl-a-butanol 570 mg/L [13].

In the absence of direct electron transfer, hydrogen led the reduction process with a hybrid microbial–water-splitting catalyst system [13, 101]. The hydrogen from water splitting was used to reduce carbon dioxide to produce liquid fuels and engineered Ralstonia eutropha produced isopropanol up to 216 mg/L [101]. Fermentative hydrogen production enhanced at −0.6 V vs. SHE led to increased 1,3-propandiol production [93]. Electrochemical generation of formate also mediated electron supplementation to microbes from a cathode in BES [13].

Conclusions

The cathodic reaction in BES is of increasing concern in the context of producing alternative fuels. Beginning with metal-utilizing bacteria, several electroactive bacteria were found and applied for the conversion of electrical to chemical energy as biofuels or biotransformation (Fig. 6). Nonetheless, many technical challenges must still be addressed and the titer of final product is also low. However, research is still in an early stage and efforts such as cell membrane modification and cathode surface modification would enhance the efficiency of BES, as shown in previous studies on MFC.

Fig. 6
figure 6

The application of bioelectrochemical reduction for cathodic electron transfer from a cathode to a microbe

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Abbreviations

BES:

bioelectrochemical synthesis

COEs:

conjugated oligoelectrolytes

Ech:

energy-conserving hydrogenase

EPS:

extracellular polymeric substances

ETP:

electron transport phosphorylation

FBEB:

flavin-based electron bifurcation

FeOB:

iron-oxidizing bacteria

MES:

microbial electrosynthesis

MFC:

microbial fuel cells

Rub:

Rubredoxin

RVC:

reticulated vitreous carbon

SHE:

standard hydrogen electrode

SLP:

substrate-level phosphorylation

SRB:

sulfate-reducing bacteria

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Authors’ contributions

OC and BIS conceptualized the manuscript. OC was responsible for literature review, data acquisition and analysis, and initial writing. BIS contributed with review and editing. Both authors read and approved the final manuscript.

Acknowledgements

This work was supported by the research fund of the Korean Ministry of Environment as “Converging Technology Project (202–101–006)” and the Korea Government Ministry of Trade, Industry and Energy as “the New & Renewable Energy of the Korea Institute of Energy Technology Evaluation and Planning (KETEP, No. 20133030000300).”

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  1. Department of Chemical Engineering, Hanyang University, 222 Wangshimni-ro, Seongdong-gu, Seoul, 04763, South Korea

    Okkyoung Choi & Byoung-In Sang

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Choi, O., Sang, BI. Extracellular electron transfer from cathode to microbes: application for biofuel production. Biotechnol Biofuels 9, 11 (2016). https://doi.org/10.1186/s13068-016-0426-0

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Biotechnology for Biofuels and Bioproducts

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