PARAMETER ESTIMATION FOR A MECHANISTIC MODEL OF HIGH DOSE IRRADIATION DAMAGE USING NELDER-MEAD SIMPLEX METHOD AND GENETIC ALGORITHM

Authors

  • Fuaada Mohd Siam Mathematical Science Department, Faculty of Science, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor,Malaysia
  • Mohamad Hidayad Ahmad Kamal Mathematical Science Department, Faculty of Science, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor,Malaysia
  • Farhana Johar Mathematical Science Department, Faculty of Science, Universiti Teknologi Malaysia, 81310 UTM Johor Bahru, Johor,Malaysia

DOI:

https://doi.org/10.11113/jt.v78.10146

Keywords:

Parameter estimation, Irradiation damage, Nelder-Mead simplex method, Genetic algorithm, Sum of square error

Abstract

Radiation therapy is one of the cancer cells treatments that use high-energy radiation to shrink tumors and kill cancer cells. Radiation therapy kills cancer cells by damaging their DNA directly or creates charged particles within the cells that can in turn damage the DNA. As a side effect of the treatment, the radiation therapy can also damage the normal cell that located at parts of our body. The main goals of radiation therapy are to maximize the damaging of tumors cell and minimize the damage of normal tissue cell. Hence, in this study, we adopt an existing model of high dose irradiation damage. The purpose of this study is to estimate the six parameters of the model which are involved. Two optimization algorithms are used in order to estimate the parameters: Nelder-Mead (NM) simplex method and Genetic Algorithm (GA). Both methods have to achieve the objective function which is to minimize the sum of square error (SSE) between the experimental data and the simulation data. The performances of both algorithms are compared based on the computational time, number of iteration and value of sum of square error. The optimization process is carried out using MATLAB programming built-in functions. The parameters estimation results shown that Nelder-Mead simplex method is more superior compare to Genetic Algorithm for this problem.

References

Ballarini. F. 2010. From DNA Radiation Damage To Cell Death: Theoretical Approaches. Journal of Nucleic Acids. 3: 7-15.

Sachs, R. K. Hahnfeldt, P. and D. J. 1997. Brenner. The Link Between Low-LET Dose-Response Relations And The Underlying Kinetics Of Damage Production/Repair/Misrepair. International Journal of Radiation Biology. 72: 351-374.

Siam, F. M. Grinfeld, M. Bahar, A. Rahman, H. A. Ahmad,H., Johar. F. 2016. A Mechanistic Model Of High Dose Irradiation Damage. Mathematics and Computers in Simulation. DOI:10.1016/j.matcom.2016.02.007.

Albright, N. 1989. A Markov Formulation Of The Repair-Misrepair Model Of Cell Survival. Radiation Research. 118(1): 1-20.

Chadwick, K. H. and Leenhout, H. P. 1973. A Molecular Theory Of Cell Survival. Physic Medical Biology. 18(1): 78-87.

Bromfield, G. P., Meng, A., Warde P., and Bristow R. G. 2003. Cell Death In Irradiated Prostate Epithelial Cells: Role Of Apoptotic And Clonogenic Cell Kill. Prostate Cancer and Prostatic Diseases. 6: 73-85.

Curtis, S. B. 1986. Lethal And Potentially Lethal Lesions Induced By Radiation - A Unified Repair Model. Radiation Research. 106: 252-270.

Price, C., Byatt, D., Coope, I. 2003. 40 Years Of The Nelder-Mead Algorithm. University of Canterbury, New Zealand.

Ouriaa, A. and Toufigha, M. 2009. Application Of Nelder-Mead Simplex Method For Unconfined Seepage Problems. Applied Mathematical Modelling. 33(9): 3589-3598.

Luersena, M. A., and Richec, R. L. 2004. Globalized Nelder-Mead Method For Engineering Optimization. Computers & Structures. 82: 2251-2260.

Xiong, Q., and Jutan, A. 2003. Continuous Optimization Using A Dynamic Simplex Method. Chemical Engineering Science. 58: 3817-3828.

Pandi, M., and Premalatha, K. 2004. An Advanced Nelder-Mead Simplex Method For Clustering Of Gene Expression Data. International Journal of Computer, Electrical, Automation, Control and Information Engineering. 8(4): 1-9.

Hermawanto, D. 2013. Genetic Algorithm For Solving Simple Mathematical Equality Problem. Retrieved from Cornell University Library website: https://arxiv.org/abs/1308.4675.

International Conference on Systems, Man and Cybernetics Evolving to Systems, Humans, Organizations, and Their Complex Interactions. 2000. Cybernetics Evolving to Systems, Humans, Organizations, and Their Complex Interactions. SMC 2000 Conference Proceedings; Vol. 3. Piscataway. NJ: IEEE Service Center.

Gordini, N. 2014 A Genetic Algorithm Approach For Sees Bankruptcy Prediction: Empirical Evidence From Italy. Expert Systems with Applications. 41(14): 6433-6445.

Hoque, M. S., Mukit M. A., and Bikas M. A. 2012. An Implementation Of Intrusion Detection System Using Genetic Algorithm. International Journal of Network Security & Its Applications. 4(2): 1-12.

Mitchell, M. 1998. An Introduction to Genetic Algorithms. 1st Edition. London, England: First MIT Press Paperback Addition.

Archdeacon, T. J. 1994. Correlation And Regression Analysis A Historian’s Guide. 5th Edition United State of America: The University of Wisconsis Press.

Downloads

Published

2016-12-04

How to Cite

PARAMETER ESTIMATION FOR A MECHANISTIC MODEL OF HIGH DOSE IRRADIATION DAMAGE USING NELDER-MEAD SIMPLEX METHOD AND GENETIC ALGORITHM. (2016). Jurnal Teknologi, 78(12-2). https://doi.org/10.11113/jt.v78.10146