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The asymmetric unit of the title complex, [Ni(C11H29N5)](ClO4)2, consists of an [Ni(C11H29N5)]2+ cation and two uncoordinated perchlorate anions. The NiII atom is five-coordinated in a slightly distorted square-pyramidal geometry, with four of the N atoms forming the basal plane and the fifth N atom in the apical position. The complex shows a three-dimensional network structure assembled by inter­molecular hydrogen bonds.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806024330/ww2017sup1.cif
Contains datablocks I, global

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S1600536806024330/ww2017Isup2.hkl
Contains datablock I

CCDC reference: 613848

Key indicators

  • Single-crystal X-ray study
  • T = 298 K
  • Mean [sigma](C-C) = 0.015 Å
  • Disorder in solvent or counterion
  • R factor = 0.064
  • wR factor = 0.131
  • Data-to-parameter ratio = 11.4

checkCIF/PLATON results

No syntax errors found



Alert level B PLAT026_ALERT_3_B Ratio Observed / Unique Reflections too Low .... 34 Perc.
Alert level C RINTA01_ALERT_3_C The value of Rint is greater than 0.10 Rint given 0.120 PLAT020_ALERT_3_C The value of Rint is greater than 0.10 ......... 0.12 PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for Ni1 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for Cl2 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for Cl1 PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 41.00 Perc. PLAT341_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 15 PLAT480_ALERT_4_C Long H...A H-Bond Reported H2 .. CL1 .. 2.95 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H4B .. O6' .. 2.64 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H4B .. O5 .. 2.66 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H5B .. CL2 .. 2.94 Ang.
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 12 ALERT level C = Check and explain 0 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 1 ALERT type 2 Indicator that the structure model may be wrong or deficient 4 ALERT type 3 Indicator that the structure quality may be low 7 ALERT type 4 Improvement, methodology, query or suggestion

Computing details top

Data collection: SMART (Siemens, 1996); cell refinement: SMART; data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997a); molecular graphics: SHELXTL (Sheldrick, 1997b); software used to prepare material for publication: SHELXTL.

[N,N,N'-Tris(3-aminopropyl)ethylenediamine-κ5N]nickel bis(perchlorate) top
Crystal data top
[Ni(C11H29N5)](ClO4)2F(000) = 1024
Mr = 489.00Dx = 1.627 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 882 reflections
a = 9.454 (4) Åθ = 2.6–15.9°
b = 14.589 (7) ŵ = 1.29 mm1
c = 14.477 (7) ÅT = 298 K
β = 90.285 (8)°Block, blue–purple
V = 1996.6 (16) Å30.42 × 0.30 × 0.19 mm
Z = 4
Data collection top
Bruker SMART CCD area-detector
diffractometer
3526 independent reflections
Radiation source: fine-focus sealed tube1216 reflections with I > σ(I)
Graphite monochromatorRint = 0.120
φ and ω scansθmax = 25.0°, θmin = 2.0°
Absorption correction: multi-scan
(SADABS; Sheldrick, 1996)
h = 1111
Tmin = 0.614, Tmax = 0.792k = 1711
10278 measured reflectionsl = 1716
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.131H-atom parameters constrained
S = 1.00 w = 1/[σ2(Fo2) + (0.0268P)2]
where P = (Fo2 + 2Fc2)/3
3526 reflections(Δ/σ)max < 0.001
309 parametersΔρmax = 0.48 e Å3
655 restraintsΔρmin = 0.41 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/UeqOcc. (<1)
Ni10.27513 (10)0.22865 (7)0.41737 (7)0.0534 (4)
Cl10.2966 (3)0.20870 (19)0.12416 (17)0.0691 (7)
Cl20.3749 (3)0.0277 (2)0.65403 (19)0.0765 (8)
N10.2535 (7)0.0906 (4)0.3952 (5)0.085 (2)
H1A0.29650.07760.34140.102*
H1B0.30230.06160.44000.102*
N20.0920 (7)0.2547 (5)0.3447 (5)0.078 (2)
H20.11910.25470.28440.093*
N30.3067 (8)0.3694 (5)0.4042 (5)0.073 (2)
N40.4817 (6)0.2105 (4)0.4505 (4)0.069 (2)
H4A0.49920.23780.50510.083*
H4B0.49840.15020.45740.083*
N50.1922 (6)0.2329 (4)0.5452 (4)0.070 (2)
H5A0.09760.23700.53880.083*
H5B0.21040.17860.57230.083*
O10.153 (2)0.178 (2)0.1141 (18)0.092 (6)0.44 (4)
O20.302 (4)0.2993 (17)0.106 (2)0.130 (7)0.44 (4)
O30.377 (3)0.165 (2)0.0593 (17)0.112 (7)0.44 (4)
O1'0.368 (2)0.2862 (13)0.0877 (13)0.108 (5)0.56 (4)
O2'0.327 (3)0.1328 (12)0.0672 (13)0.114 (6)0.56 (4)
O3'0.1498 (13)0.225 (2)0.1266 (12)0.094 (5)0.56 (4)
O40.3413 (6)0.1918 (5)0.2145 (4)0.118 (2)
O50.4709 (13)0.0972 (10)0.6320 (8)0.142 (4)0.743 (9)
O60.4428 (14)0.0327 (7)0.7138 (8)0.131 (4)0.743 (9)
O70.3495 (14)0.0190 (8)0.5722 (7)0.141 (4)0.743 (9)
O80.2616 (11)0.0655 (8)0.6948 (8)0.133 (4)0.743 (9)
O5'0.269 (2)0.0154 (19)0.5840 (16)0.110 (7)0.257 (9)
O6'0.5088 (18)0.011 (2)0.626 (2)0.141 (8)0.257 (9)
O7'0.334 (3)0.019 (2)0.7331 (14)0.113 (7)0.257 (9)
O8'0.366 (4)0.1261 (11)0.6757 (18)0.115 (7)0.257 (9)
C10.1111 (11)0.0493 (6)0.3915 (7)0.098 (3)
H1C0.11960.01450.37350.118*
H1D0.07010.05100.45270.118*
C20.0148 (10)0.0960 (8)0.3265 (7)0.111 (3)
H2A0.05770.09470.26580.133*
H2B0.07210.06070.32280.133*
C30.0223 (10)0.1914 (7)0.3479 (7)0.100 (3)
H3A0.09460.21140.30470.120*
H3B0.06300.19330.40930.120*
C40.0569 (9)0.3514 (7)0.3643 (6)0.092 (3)
H4C0.01440.37270.32090.111*
H4D0.01890.35670.42610.111*
C50.1822 (11)0.4069 (7)0.3563 (6)0.097 (3)
H5C0.16230.46730.38100.116*
H5D0.20440.41400.29140.116*
C60.4351 (13)0.3893 (6)0.3442 (6)0.096 (4)
H6A0.41590.36690.28230.115*
H6B0.44690.45530.34020.115*
C70.5715 (11)0.3482 (9)0.3773 (7)0.107 (4)
H7A0.64640.36950.33710.128*
H7B0.59120.37210.43860.128*
C80.5794 (10)0.2472 (7)0.3818 (6)0.089 (3)
H8A0.55650.22180.32160.107*
H8B0.67520.22890.39740.107*
C90.3289 (10)0.4193 (6)0.4932 (7)0.089 (3)
H9A0.32550.48460.48050.107*
H9B0.42350.40550.51550.107*
C100.2266 (11)0.3990 (7)0.5692 (7)0.096 (3)
H10A0.13150.40810.54560.116*
H10B0.24160.44320.61840.116*
C110.2360 (10)0.3044 (7)0.6098 (6)0.087 (3)
H11A0.33270.29290.62920.104*
H11B0.17670.30150.66420.104*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Ni10.0412 (6)0.0583 (7)0.0608 (7)0.0036 (6)0.0004 (5)0.0026 (6)
Cl10.0592 (18)0.085 (2)0.0629 (17)0.0027 (17)0.0081 (14)0.0086 (16)
Cl20.077 (2)0.081 (2)0.071 (2)0.0016 (18)0.0050 (16)0.0032 (17)
N10.080 (5)0.094 (5)0.081 (5)0.015 (4)0.006 (4)0.003 (4)
N20.054 (4)0.097 (5)0.082 (4)0.019 (4)0.012 (4)0.018 (4)
N30.078 (5)0.076 (5)0.064 (5)0.001 (4)0.021 (5)0.002 (4)
N40.062 (5)0.074 (6)0.072 (5)0.003 (4)0.010 (4)0.011 (4)
N50.061 (5)0.068 (5)0.079 (5)0.010 (4)0.007 (4)0.003 (5)
O10.052 (9)0.110 (12)0.114 (10)0.014 (9)0.009 (8)0.007 (10)
O20.120 (14)0.107 (12)0.165 (13)0.012 (11)0.044 (12)0.023 (11)
O30.089 (12)0.132 (14)0.117 (11)0.028 (11)0.065 (10)0.032 (11)
O1'0.080 (10)0.099 (10)0.146 (10)0.017 (9)0.062 (8)0.038 (8)
O2'0.115 (12)0.101 (11)0.127 (10)0.019 (9)0.039 (9)0.038 (9)
O3'0.044 (7)0.134 (12)0.103 (8)0.026 (8)0.009 (6)0.011 (9)
O40.085 (5)0.187 (6)0.082 (5)0.010 (4)0.011 (4)0.036 (4)
O50.124 (9)0.147 (9)0.154 (9)0.044 (8)0.034 (7)0.046 (8)
O60.154 (10)0.124 (8)0.115 (8)0.032 (8)0.000 (8)0.044 (7)
O70.171 (10)0.156 (9)0.094 (7)0.038 (7)0.032 (7)0.054 (6)
O80.101 (8)0.113 (8)0.185 (9)0.024 (7)0.074 (7)0.038 (7)
O5'0.094 (13)0.124 (13)0.110 (12)0.021 (12)0.007 (12)0.016 (12)
O6'0.106 (14)0.142 (14)0.174 (14)0.006 (13)0.056 (13)0.009 (14)
O7'0.121 (14)0.114 (13)0.104 (13)0.026 (13)0.026 (13)0.049 (12)
O8'0.127 (14)0.109 (14)0.108 (13)0.024 (13)0.014 (13)0.016 (12)
C10.111 (7)0.084 (6)0.100 (6)0.043 (6)0.017 (6)0.005 (5)
C20.077 (6)0.136 (7)0.120 (6)0.045 (6)0.005 (5)0.020 (6)
C30.070 (5)0.131 (7)0.100 (6)0.017 (6)0.005 (5)0.016 (6)
C40.068 (6)0.121 (7)0.088 (6)0.025 (6)0.022 (5)0.001 (6)
C50.104 (7)0.093 (6)0.093 (6)0.007 (6)0.030 (6)0.004 (5)
C60.163 (12)0.060 (7)0.065 (7)0.038 (8)0.018 (8)0.012 (6)
C70.086 (9)0.156 (13)0.077 (8)0.048 (10)0.018 (7)0.011 (8)
C80.056 (7)0.124 (10)0.088 (8)0.011 (7)0.003 (6)0.029 (8)
C90.095 (9)0.058 (7)0.114 (9)0.001 (6)0.009 (7)0.027 (7)
C100.099 (9)0.094 (9)0.097 (9)0.005 (8)0.015 (7)0.047 (7)
C110.093 (8)0.110 (9)0.058 (7)0.011 (7)0.008 (6)0.006 (7)
Geometric parameters (Å, º) top
Ni1—N52.015 (6)N5—C111.459 (9)
Ni1—N42.026 (6)N5—H5A0.9000
Ni1—N12.049 (6)N5—H5B0.9000
Ni1—N22.058 (6)C1—C21.472 (11)
Ni1—N32.084 (7)C1—H1C0.9700
Cl1—O21.35 (2)C1—H1D0.9700
Cl1—O31.37 (2)C2—C31.470 (11)
Cl1—O41.394 (6)C2—H2A0.9700
Cl1—O3'1.410 (11)C2—H2B0.9700
Cl1—O2'1.411 (12)C3—H3A0.9700
Cl1—O1'1.422 (11)C3—H3B0.9700
Cl1—O11.435 (19)C4—C51.439 (11)
Cl2—O81.344 (9)C4—H4C0.9700
Cl2—O6'1.354 (14)C4—H4D0.9700
Cl2—O71.387 (9)C5—H5C0.9700
Cl2—O7'1.389 (14)C5—H5D0.9700
Cl2—O61.391 (9)C6—C71.500 (12)
Cl2—O51.398 (10)C6—H6A0.9700
Cl2—O5'1.432 (14)C6—H6B0.9700
Cl2—O8'1.471 (14)C7—C81.476 (11)
N1—C11.476 (9)C7—H7A0.9700
N1—H1A0.9000C7—H7B0.9700
N1—H1B0.9000C8—H8A0.9700
N2—C31.422 (10)C8—H8B0.9700
N2—C41.477 (10)C9—C101.498 (11)
N2—H20.9100C9—H9A0.9700
N3—C51.468 (10)C9—H9B0.9700
N3—C91.494 (9)C10—C111.502 (10)
N3—C61.524 (11)C10—H10A0.9700
N4—C81.462 (9)C10—H10B0.9700
N4—H4A0.9000C11—H11A0.9700
N4—H4B0.9000C11—H11B0.9700
N5—Ni1—N499.5 (3)N2—C3—H3A108.5
N5—Ni1—N197.8 (3)C2—C3—H3A108.5
N4—Ni1—N190.3 (3)N2—C3—H3B108.5
N5—Ni1—N297.7 (3)C2—C3—H3B108.5
N4—Ni1—N2162.4 (3)H3A—C3—H3B107.5
N1—Ni1—N291.0 (3)C5—C4—N2109.6 (8)
N5—Ni1—N396.3 (3)C5—C4—H4C109.7
N4—Ni1—N390.7 (3)N2—C4—H4C109.7
N1—Ni1—N3165.5 (3)C5—C4—H4D109.7
N2—Ni1—N383.8 (3)N2—C4—H4D109.7
C1—N1—Ni1119.8 (6)H4C—C4—H4D108.2
C1—N1—H1A107.4C4—C5—N3114.3 (8)
Ni1—N1—H1A107.4C4—C5—H5C108.7
C1—N1—H1B107.4N3—C5—H5C108.7
Ni1—N1—H1B107.4C4—C5—H5D108.7
H1A—N1—H1B106.9N3—C5—H5D108.7
C3—N2—C4116.3 (8)H5C—C5—H5D107.6
C3—N2—Ni1120.0 (6)C7—C6—N3115.3 (8)
C4—N2—Ni1105.5 (5)C7—C6—H6A108.4
C3—N2—H2104.4N3—C6—H6A108.4
C4—N2—H2104.4C7—C6—H6B108.4
Ni1—N2—H2104.4N3—C6—H6B108.4
C5—N3—C9109.6 (7)H6A—C6—H6B107.5
C5—N3—C6107.4 (8)C8—C7—C6117.1 (9)
C9—N3—C6106.8 (7)C8—C7—H7A108.0
C5—N3—Ni1107.2 (6)C6—C7—H7A108.0
C9—N3—Ni1114.9 (5)C8—C7—H7B108.0
C6—N3—Ni1110.8 (5)C6—C7—H7B108.0
C8—N4—Ni1113.7 (5)H7A—C7—H7B107.3
C8—N4—H4A108.8N4—C8—C7111.3 (8)
Ni1—N4—H4A108.8N4—C8—H8A109.4
C8—N4—H4B108.8C7—C8—H8A109.4
Ni1—N4—H4B108.8N4—C8—H8B109.4
H4A—N4—H4B107.7C7—C8—H8B109.4
C11—N5—Ni1120.0 (5)H8A—C8—H8B108.0
C11—N5—H5A107.3N3—C9—C10116.7 (8)
Ni1—N5—H5A107.3N3—C9—H9A108.1
C11—N5—H5B107.3C10—C9—H9A108.1
Ni1—N5—H5B107.3N3—C9—H9B108.1
H5A—N5—H5B106.9C10—C9—H9B108.1
C2—C1—N1113.3 (8)H9A—C9—H9B107.3
C2—C1—H1C108.9C9—C10—C11115.6 (8)
N1—C1—H1C108.9C9—C10—H10A108.4
C2—C1—H1D108.9C11—C10—H10A108.4
N1—C1—H1D108.9C9—C10—H10B108.4
H1C—C1—H1D107.7C11—C10—H10B108.4
C3—C2—C1116.8 (9)H10A—C10—H10B107.4
C3—C2—H2A108.1N5—C11—C10113.0 (7)
C1—C2—H2A108.1N5—C11—H11A109.0
C3—C2—H2B108.1C10—C11—H11A109.0
C1—C2—H2B108.1N5—C11—H11B109.0
H2A—C2—H2B107.3C10—C11—H11B109.0
N2—C3—C2115.3 (9)H11A—C11—H11B107.8
N5—Ni1—N1—C163.7 (7)N4—Ni1—N5—C1161.2 (6)
N4—Ni1—N1—C1163.4 (6)N1—Ni1—N5—C11152.8 (6)
N2—Ni1—N1—C134.2 (7)N2—Ni1—N5—C11115.1 (6)
N3—Ni1—N1—C1102.9 (13)N3—Ni1—N5—C1130.6 (6)
N5—Ni1—N2—C364.0 (7)Ni1—N1—C1—C252.1 (10)
N4—Ni1—N2—C3128.2 (9)N1—C1—C2—C364.4 (12)
N1—Ni1—N2—C334.0 (7)C4—N2—C3—C2178.9 (8)
N3—Ni1—N2—C3159.6 (7)Ni1—N2—C3—C252.0 (11)
N5—Ni1—N2—C469.7 (6)C1—C2—C3—N265.3 (12)
N4—Ni1—N2—C498.1 (10)C3—N2—C4—C5178.8 (8)
N1—Ni1—N2—C4167.7 (6)Ni1—N2—C4—C545.5 (9)
N3—Ni1—N2—C425.8 (6)N2—C4—C5—N347.2 (11)
N5—Ni1—N3—C594.5 (6)C9—N3—C5—C4102.1 (10)
N4—Ni1—N3—C5165.8 (6)C6—N3—C5—C4142.3 (8)
N1—Ni1—N3—C572.1 (14)Ni1—N3—C5—C423.2 (10)
N2—Ni1—N3—C52.6 (6)C5—N3—C6—C7174.4 (8)
N5—Ni1—N3—C927.5 (6)C9—N3—C6—C768.2 (10)
N4—Ni1—N3—C972.2 (6)Ni1—N3—C6—C757.6 (9)
N1—Ni1—N3—C9165.9 (10)N3—C6—C7—C862.6 (12)
N2—Ni1—N3—C9124.6 (6)Ni1—N4—C8—C766.9 (9)
N5—Ni1—N3—C6148.6 (6)C6—C7—C8—N465.3 (12)
N4—Ni1—N3—C648.9 (6)C5—N3—C9—C1072.8 (10)
N1—Ni1—N3—C644.7 (14)C6—N3—C9—C10171.2 (8)
N2—Ni1—N3—C6114.3 (6)Ni1—N3—C9—C1047.9 (10)
N5—Ni1—N4—C8152.0 (6)N3—C9—C10—C1168.4 (11)
N1—Ni1—N4—C8110.1 (6)Ni1—N5—C11—C1050.8 (10)
N2—Ni1—N4—C815.8 (12)C9—C10—C11—N567.6 (11)
N3—Ni1—N4—C855.5 (6)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1A···O40.902.523.119 (9)125
N1—H1B···O50.902.222.95 (2)138
N1—H1B···O70.902.293.150 (13)160
N2—H2···O30.912.343.24 (2)166
N2—H2···O40.912.513.161 (10)129
N2—H2···Cl10.912.953.801 (8)157
N4—H4A···O3i0.902.323.140 (17)151
N4—H4A···O1i0.902.473.29 (3)153
N4—H4B···O7ii0.902.433.235 (13)149
N4—H4B···O6ii0.902.643.42 (3)145
N4—H4B···O50.902.663.107 (12)112
N5—H5A···O1iii0.902.313.14 (2)153
N5—H5A···O3iii0.902.543.33 (3)147
N5—H5B···O80.902.232.95 (2)136
N5—H5B···O50.902.453.30 (3)158
N5—H5B···O80.902.473.328 (14)160
N5—H5B···Cl20.902.943.794 (7)159
Symmetry codes: (i) x+1/2, y+1/2, z+1/2; (ii) x+1, y, z+1; (iii) x1/2, y+1/2, z+1/2.
 

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