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The electron density of the halogen-bonded complex of 4,4′-dipyridyl-N,N′-dioxide (bpNO) with 1,4-diiodotetrafluorobenzene (F4dIb) at 90 K has been determined by X-ray diffraction and analysed. The nature of the I...O intermolecular bond connecting the bpNO and F4dIb molecules into one-dimensional infinite chains, as well as the other non-covalent interactions present in the crystal, such as C—H...O, C—H...F and C—H...I hydrogen bonds and C...C, C...N, C...I and F...F interactions, have been investigated. The integration of electron density over the atomic basins reveals the electrostatic nature of the I...O halogen bond, which is very similar to a previously analysed I...N halogen bond.

Supporting information

cif

Crystallographic Information File (CIF) https://doi.org/10.1107/S0108768104014557/bs5005sup1.cif
Contains datablocks global, I

hkl

Structure factor file (CIF format) https://doi.org/10.1107/S0108768104014557/bs5005sup2.hkl
Supplementary material

pdf

Portable Document Format (PDF) file https://doi.org/10.1107/S0108768104014557/bs5005sup3.pdf
Supplementary material

CCDC reference: 255089

Computing details top

Data collection: Bruker SMART; cell refinement: Bruker SAINT; data reduction: Bruker SAINT; program(s) used to solve structure: SIR92, (Altomare et al., 1994); program(s) used to refine structure: VALRAY (Stewart & Spackman, 1983; Stewart, Spackman & Flensburg, 2001); molecular graphics: ORTEP III ( Burnett&Johnson, 1996); software used to prepare material for publication: PARST (Nardelli, 1995).

Figures top
[Figure 1]
[Figure 2]
[Figure 3]
[Figure 4]
[Figure 5]
[Figure 6]
bi-(4-pyridyl-N-oxide).1,4-diiodo-2,3,5,6-tetrafluorobenzene top
Crystal data top
(C10H8N2O2)·(C6I2F4)Z = 1
Mr = 590.04F(000) = 276
Triclinic, P1Dx = 2.274 Mg m3
a = 4.2279 (10) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.009 (2) ÅCell parameters from 8425 reflections
c = 13.569 (3) Åθ = 2.8–59.5°
α = 101.180 (5)°µ = 3.70 mm1
β = 98.946 (5)°T = 90 K
γ = 102.349 (5)°Prism, colourless
V = 430.91 (18) Å30.30 × 0.11 × 0.04 mm
Data collection top
Bruker APEX CCD area detector
diffractometer
12612 independent reflections
Radiation source: fine-focus sealed tube12122 reflections with > 0
Graphite monochromatorRint = 0.027
ω and ϕ scansθmax = 60.1°, θmin = 2.7°
Absorption correction: multi-scan
SADABS, Bruker, 1997
h = 89
Tmin = 0.819, Tmax = 1.000k = 1919
53777 measured reflectionsl = 3332
Refinement top
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
wR(F2) = 0.050All H-atom parameters refined
S = 1.01 w = 1/[σ2(Fo2)]
12579 reflections(Δ/σ)max = 0.001
387 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = 0.49 e Å3
Primary atom site location: structure-invariant direct methods
Crystal data top
(C10H8N2O2)·(C6I2F4)γ = 102.349 (5)°
Mr = 590.04V = 430.91 (18) Å3
Triclinic, P1Z = 1
a = 4.2279 (10) ÅMo Kα radiation
b = 8.009 (2) ŵ = 3.70 mm1
c = 13.569 (3) ÅT = 90 K
α = 101.180 (5)°0.30 × 0.11 × 0.04 mm
β = 98.946 (5)°
Data collection top
Bruker APEX CCD area detector
diffractometer
12612 independent reflections
Absorption correction: multi-scan
SADABS, Bruker, 1997
12122 reflections with > 0
Tmin = 0.819, Tmax = 1.000Rint = 0.027
53777 measured reflections
Refinement top
wR(F2) = 0.0500 restraints
S = 1.01All H-atom parameters refined
12579 reflectionsΔρmax = 0.22 e Å3
387 parametersΔρmin = 0.49 e Å3
Special details top

Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 0 is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
I0.61751 (7)0.30261 (5)0.19332 (2)0.01490 (6)
C60.2567 (2)0.12134 (13)0.07682 (7)0.01395 (16)
C70.1769 (3)0.15072 (15)0.02026 (8)0.01618 (19)
C80.0747 (3)0.03179 (14)0.09519 (7)0.01561 (18)
F10.336 (2)0.2961 (10)0.0437 (5)0.0268 (4)
F20.138 (2)0.0672 (10)0.1879 (4)0.0241 (3)
O1.0343 (3)0.51013 (15)0.36844 (8)0.01676 (18)
N1.2965 (2)0.64053 (11)0.40300 (7)0.01241 (14)
C11.4311 (2)0.73095 (13)0.33832 (7)0.01401 (16)
C21.7050 (2)0.87171 (13)0.37509 (7)0.01398 (16)
C31.8552 (2)0.92422 (11)0.47969 (7)0.01168 (14)
C41.7114 (2)0.82543 (12)0.54328 (7)0.01274 (15)
C51.4344 (2)0.68731 (12)0.50483 (7)0.01327 (15)
H11.300 (9)0.678 (5)0.256 (3)0.020 (9)*
H21.795 (7)0.936 (4)0.322 (2)0.034 (9)*
H41.782 (8)0.849 (4)0.626 (3)0.041 (10)*
H51.305 (7)0.613 (4)0.550 (2)0.031 (10)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
I0.01292 (10)0.01735 (11)0.01443 (10)0.00143 (8)0.00086 (8)0.00107 (9)
C60.0148 (3)0.0154 (3)0.0116 (3)0.0016 (2)0.0012 (2)0.0014 (2)
C70.0198 (4)0.0165 (3)0.0123 (3)0.0013 (3)0.0007 (2)0.0031 (2)
C80.0191 (3)0.0167 (3)0.0110 (3)0.0007 (3)0.0004 (2)0.0029 (2)
F10.0370 (8)0.0227 (5)0.0207 (5)0.0093 (5)0.0004 (5)0.0079 (4)
F20.0340 (6)0.0249 (5)0.0136 (3)0.0016 (5)0.0029 (4)0.0068 (3)
O0.0166 (3)0.0175 (3)0.0162 (3)0.0052 (3)0.0008 (2)0.0023 (3)
N0.0123 (2)0.0123 (2)0.0127 (2)0.0003 (2)0.0005 (2)0.0021 (2)
C10.0145 (3)0.0158 (3)0.0117 (3)0.0013 (2)0.0005 (2)0.0028 (2)
C20.0147 (3)0.0152 (3)0.0120 (3)0.0009 (2)0.0009 (2)0.0032 (2)
C30.0110 (2)0.0118 (2)0.0123 (2)0.0006 (2)0.0011 (2)0.0023 (2)
C40.0132 (3)0.0131 (3)0.0119 (3)0.0009 (2)0.0003 (2)0.0025 (2)
C50.0135 (3)0.0136 (3)0.0127 (3)0.0006 (2)0.0015 (2)0.0032 (2)
Geometric parameters (Å, º) top
I—C62.0848 (9)C1—C21.3800 (12)
C6—C71.3858 (15)C1—H11.12 (4)
C6—C8i1.3903 (15)C2—C31.4031 (13)
C7—F11.336 (8)C2—H21.03 (4)
C7—C81.3883 (13)C3—C41.4007 (14)
C8—F21.342 (6)C3—C3ii1.4737 (11)
C8—C6i1.390 (2)C4—C51.3783 (12)
O—N1.3010 (12)C4—H41.08 (3)
N—C11.3579 (15)C5—H51.07 (4)
N—C51.3582 (13)
C7—C6—C8i117.05 (8)C2—C1—H1126 (2)
C7—C6—I122.06 (7)C1—C2—C3121.25 (9)
C8i—C6—I120.83 (7)C1—C2—H2117 (2)
F1—C7—C6120.8 (3)C3—C2—H2121 (2)
F1—C7—C8118.2 (4)C4—C3—C2116.09 (8)
C6—C7—C8121.00 (10)C4—C3—C3ii122.03 (9)
F2—C8—C7118.1 (3)C2—C3—C3ii121.87 (11)
F2—C8—C6i119.9 (3)C5—C4—C3121.47 (9)
C7—C8—C6i121.95 (9)C5—C4—H4111 (2)
O—N—C1120.56 (10)C3—C4—H4127 (2)
O—N—C5119.57 (9)N—C5—C4120.61 (9)
C1—N—C5119.87 (9)N—C5—H5115 (2)
N—C1—C2120.69 (10)C4—C5—H5125 (2)
N—C1—H1113 (2)
Symmetry codes: (i) x, y, z; (ii) x+4, y+2, z+1.

Experimental details

Crystal data
Chemical formula(C10H8N2O2)·(C6I2F4)
Mr590.04
Crystal system, space groupTriclinic, P1
Temperature (K)90
a, b, c (Å)4.2279 (10), 8.009 (2), 13.569 (3)
α, β, γ (°)101.180 (5), 98.946 (5), 102.349 (5)
V3)430.91 (18)
Z1
Radiation typeMo Kα
µ (mm1)3.70
Crystal size (mm)0.30 × 0.11 × 0.04
Data collection
DiffractometerBruker APEX CCD area detector
diffractometer
Absorption correctionMulti-scan
SADABS, Bruker, 1997
Tmin, Tmax0.819, 1.000
No. of measured, independent and
observed ( > 0) reflections
53777, 12612, 12122
Rint0.027
(sin θ/λ)max1)1.220
Refinement
R[F2 > 2σ(F2)], wR(F2), S ?, 0.050, 1.01
No. of reflections12579
No. of parameters387
H-atom treatmentAll H-atom parameters refined
Δρmax, Δρmin (e Å3)0.22, 0.49

Computer programs: Bruker SMART, Bruker SAINT, SIR92, (Altomare et al., 1994), VALRAY (Stewart & Spackman, 1983; Stewart, Spackman & Flensburg, 2001), ORTEP III ( Burnett&Johnson, 1996), PARST (Nardelli, 1995).

 

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