Forced translocation of a polymer: Dynamical scaling versus molecular dynamics simulation

J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis
Phys. Rev. E 85, 041801 – Published 4 April 2012

Abstract

We suggest a theoretical description of the force-induced translocation dynamics of a polymer chain through a nanopore. Our consideration is based on the tensile (Pincus) blob picture of a pulled chain and the notion of a propagating front of tensile force along the chain backbone, suggested by Sakaue [Phys. Rev. E 76, 021803 (2007); Phys. Rev. E 81, 041808 (2010); Eur. Phys. J. E 34, 135 (2011)]. The driving force is associated with a chemical potential gradient that acts on each chain segment inside the pore. Depending on its strength, different regimes of polymer motion (named after the typical chain conformation: trumpet, stem-trumpet, etc.) occur. Assuming that the local driving and drag forces are equal (i.e., in a quasistatic approximation), we derive an equation of motion for the tensile front position X(t). We show that the scaling law for the average translocation time τ changes from τN2ν/f1/ν to τN1+ν/f (for the free-draining case) as the dimensionless force f̃R=aNνf/T (where a, N, ν, f, and T are the Kuhn segment length, the chain length, the Flory exponent, the driving force, and the temperature, respectively) increases. These and other predictions are tested by molecular-dynamics simulation. Data from our computer experiment indicate indeed that the translocation scaling exponent α grows with the pulling force f̃R, albeit the observed exponent α stays systematically smaller than the theoretically predicted value. This might be associated with fluctuations that are neglected in the quasistatic approximation.

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  • Received 27 August 2011

DOI:https://doi.org/10.1103/PhysRevE.85.041801

©2012 American Physical Society

Authors & Affiliations

J. L. A. Dubbeldam1, V. G. Rostiashvili2, A. Milchev2,3, and T. A. Vilgis2

  • 1Delft Institute of Applied Mathematics, 2628CD Delft, The Netherlands
  • 2Max Planck Institute for Polymer Research, 10 Ackermannweg, 55128 Mainz, Germany
  • 3Institute for Physical Chemistry, Bulgarian Academy of Sciences, 1113 Sofia, Bulgaria

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Issue

Vol. 85, Iss. 4 — April 2012

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