Discreteness-induced slow relaxation in reversible catalytic reaction networks

Akinori Awazu and Kunihiko Kaneko
Phys. Rev. E 81, 051920 – Published 21 May 2010

Abstract

Slowing down of the relaxation of the fluctuations around equilibrium is investigated both by stochastic simulations and by analysis of master equation of reversible reaction networks consisting of reactions between a pair of resource and the corresponding high-energy product that works as a catalyst for another resource-product reaction. As the number of molecules N is decreased, the relaxation time to equilibrium is prolonged due to the deficiency of catalysts, as demonstrated by the amplification compared to that by the continuum limit. This amplification ratio of the relaxation time is represented by a scaling function as h=Nexp(βV), and it becomes prominent as N becomes less than a critical value h1, where β is the inverse temperature and V is the energy required to the transformation from resources to the corresponding products.

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  • Received 1 March 2010

DOI:https://doi.org/10.1103/PhysRevE.81.051920

©2010 American Physical Society

Authors & Affiliations

Akinori Awazu1 and Kunihiko Kaneko2,3

  • 1Department of Mathematical and Life Sciences, Hiroshima University, Kagami-yama 1-3-1, Higashi-Hiroshima 739-8526, Japan
  • 2Department of Basic Science, University of Tokyo, Komaba, Meguro-ku, Tokyo 153-8902, Japan
  • 3ERATO Complex Systems Biology, JST, Komaba, Meguro-ku, Tokyo 153-8902, Japan

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Issue

Vol. 81, Iss. 5 — May 2010

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