Geographically and temporally distant natural recombinant isolates of Plum pox virus (PPV) are genetically very similar and form a unique PPV subgroup

References

1. Aaziz R., Tepfer M. 1999; Recombination in RNA viruses and in virus-resistant transgenic plants. J Gen Virol 80:1339–1346
   [Google Scholar]
2. Atreya P. L., Lopez-Moya J. J., Chu M., Atreya C. D., Pirone T. P. 1995; Mutational analysis of the coat protein N-terminal amino acids involved in potyvirus transmission by aphids. J Gen Virol 76:265–270 [CrossRef]
   [Google Scholar]
3. Blanc S., Lopez-Moya J. J., Wang R., Garcia-Lampasona S., Thornbury D. W., Pirone T. P. 1997; A specific interaction between coat protein and helper component correlates with aphid transmission of a potyvirus. Virology 231:141–147 [CrossRef]
   [Google Scholar]
4. Bousalem M., Candresse T., Quiot-Douine L., Quiot J. B. 1994; Comparison of three methods for assessing plum pox virus variability: further evidence for the existence of two major groups of isolates. J Phytopathol 142:163–172 [CrossRef]
   [Google Scholar]
5. Bousalem M., Douzery E. J., Fargette D. 2000; High genetic diversity, distant phylogenetic relationships and intraspecies recombination events among natural populations of Yam mosaic virus: a contribution to understanding potyvirus evolution. J Gen Virol 81:243–255
   [Google Scholar]
6. Bousalem M., Dallot S., Fuji S., Natsuaki K. T. 2003; Origin, world-wide dispersion, bio-geographical diversification, radiation and recombination: an evolutionary history of Yam mild mosaic virus (YMMV). Infect Genet Evol 3:189–206 [CrossRef]
   [Google Scholar]
7. Candresse T., Cambra M., Dallot S. 9 other authors 1998; Comparison of monoclonal antibodies and polymerase chain reaction assays for the typing of isolates belonging to the M and D serotypes of plum pox potyvirus. Phytopathology 88:198–204 [CrossRef]
   [Google Scholar]
8. Cervera M. T., Riechmann J. L., Martin M. T., Garcia J. A. 1993; 3′ terminal sequence of the plum pox virus PS and o6 isolates: evidence for RNA recombination within the potyvirus group. J Gen Virol 74:329–334 [CrossRef]
   [Google Scholar]
9. Desbiez C., Lecoq H. 2004; The nucleotide sequence of Watermelon mosaic virus (WMV, Potyvirus) reveals interspecific recombination between two related potyviruses in the 5′ part of the genome. Arch Virol 149 (in press
   [Google Scholar]
10. Devereux J., Haeberli P., Smithies O. 1984; A comprehensive set of sequence analysis program for the VAX. Nucleic Acids Res 12:387–395 [CrossRef]
    [Google Scholar]
11. Dietrich C., Maiss E. 2003; Fluorescent labelling reveals spatial separation of potyvirus populations in mixed infected Nicotiana benthamiana plants. J Gen Virol 84:2871–2876 [CrossRef]
    [Google Scholar]
12. Garcia-Arenal F., Fraile A., Malpica J. M. 2001; Variability and genetic structure of plant virus populations. Annu Rev Phytopathol 39:157–186 [CrossRef]
    [Google Scholar]
13. Garcia-Arenal F., Fraile A., Malpica J. M. 2003; Variation and evolution of plant virus populations. Int Microbiol 6:225–232 [CrossRef]
    [Google Scholar]
14. Glais L., Tribodet M., Kerlan C. 2002; Genomic variability in Potato potyvirus Y (PVY): evidence that PVY^NW and PVY^NTN variants are single to multiple recombinants between PVY^O and PVY^N isolates. Arch Virol 147:363–378 [CrossRef]
    [Google Scholar]
15. Glasa M., Kúdela O., Marie-Jeanne V., Quiot J. B. 2001; Evidence of a naturally occurring recombinant isolate of Plum pox virus from Slovakia. Plant Dis 85:920
    [Google Scholar]
16. Glasa M., Marie-Jeanne V., Moury B., Kúdela O., Quiot J. B. 2002a; Molecular variability of the P3-6K1 genomic region among geographically and biologically distinct isolates of Plum pox virus. Arch Virol 147:563–575 [CrossRef]
    [Google Scholar]
17. Glasa M., Marie-Jeanne V., Labonne G., Šubr Z., Kúdela O., Quiot J. B. 2002b; Natural population of recombinant Plum pox virus is stable and competitive under field conditions. Eur J Plant Pathol 108:843–853 [CrossRef]
    [Google Scholar]
18. James D., Varga A., Thompson D., Hayes S. 2003; Detection of a new and unusual isolate of plum pox potyvirus in plum ( Prunus domestica ). Plant Dis 87:1119–1124 [CrossRef]
    [Google Scholar]
19. Klein P. G., Klein R. R., Rodriguez-Cerezo E., Hunt A. G., Shaw J. G. 1994; Mutational analysis of the tobacco vein mottling virus genome. Virology 204:759–769 [CrossRef]
    [Google Scholar]
20. Krause-Sakate R., Fakhfakh H., Peypelut M., Pavan M. A., Zerbini F. M., Marrakchi M., Candresse T., Le Gall O. 2004; A naturally occurring recombinant isolate of Lettuce mosaic virus. Arch Virol 149:191–197
    [Google Scholar]
21. Kumar S., Tamura K., Ingrid B. J., Nei M. 2001; MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244–1245 [CrossRef]
    [Google Scholar]
22. Labonne G., Yvon M., Quiot J. B., Avinent L., Llacer G. 1995; Aphids as potential vectors of plum pox virus: comparison of methods of testing and epidemiological consequences. Acta Hortic 386:207–216
    [Google Scholar]
23. Lai M. M. C. 1992; RNA recombination in animal and plant viruses. Microbiol Rev 56:61–79
    [Google Scholar]
24. Lai M. M. C. 1995; Recombination and its evolutionary effect on viruses with RNA genomes. In Molecular Basis of Virus Evolution pp  119–132 Edited by Gibbs A. J., Calisher C. H., Garcia-Arenal F. Cambridge: Cambridge University Press;
    [Google Scholar]
25. Moreno I. M., Malpica J. M., Diaz-Pendon J. A., Moriones E., Fraile A., Garcia-Arenal F. 2004; Variability and genetic structure of the population of watermelon mosaic virus infecting melon in Spain. Virology 318:451–460 [CrossRef]
    [Google Scholar]
26. Myrta A., Di Terlizzi B., Boscia D., Caglayan K., Gavriel I., Ghanem G., Varveri C., Savino V. 1998; Detection and serotyping of Mediterranean plum pox virus isolates by means of strain-specific monoclonal antibodies. Acta Virol 42:251–253
    [Google Scholar]
27. Nagy P. D., Simon A. E. 1997; New insights into the mechanisms of RNA recombination. Virology 235:1–9 [CrossRef]
    [Google Scholar]
28. Nemchinov L., Crescenzi A., Hadidi A., Piazzolla P., Verderevskaya T. 1998; Present status of the new cherry subgroup of Plum pox virus (PPV-C. In Plant Virus Disease Control pp  629–638 Edited by Hadidi A., Khetarpal R. K., Koganezawa H. St Paul, MN: American Phytopathological Society;
    [Google Scholar]
29. Palkovics L., Burgyan J., Balazs E. 1993; Comparative sequence analysis of four complete primary structure of plum pox virus strains. Virus Genes 7:339–347 [CrossRef]
    [Google Scholar]
30. Peng Y., Kadoury D., Gal-On A., Huet H., Wang Y., Raccah B. 1998; Mutations in the HC-Pro gene of zucchini yellow mosaic potyvirus: effects on aphid transmission and binding to purified virions. J Gen Virol 79:897–904
    [Google Scholar]
31. Rankovic M., Ogasanovic D., Paunovic S. 1994; Breeding of plum cultivars resistant to sharka (plum pox) disease. Acta Hortic 359:69–73
    [Google Scholar]
32. Revers F., Le Gall O., Candresse T., Le Romancer M., Dunez J. 1996; Frequent occurrence of recombinant potyvirus isolates. J Gen Virol 77:1953–1965 [CrossRef]
    [Google Scholar]
33. Riechmann J. L., Lain S., Garcia J. A. 1992; Highlights and prospects of potyvirus molecular biology. J Gen Virol 73:1–16 [CrossRef]
    [Google Scholar]
34. Saenz P., Quoit L., Quiot J. B., Candresse T., Garcia J. A. 2001; Pathogenicity determinants in the complex virus population of a Plum pox virus isolate. Mol Plant Microb Interact 14:278–287 [CrossRef]
    [Google Scholar]
35. Sawyer S. 1989; Statistical tests for detecting gene conversion. Mol Biol Evol 6:526–538
    [Google Scholar]
36. Simon A. E., Bujarski J. J. 1994; RNA–RNA recombination and evolution in virus-infected plants. Annu Rev Phytopathol 32:337–362 [CrossRef]
    [Google Scholar]
37. Simon-Buela L., Guo H. S., Garcia J. A. 1997; Long sequences in the 5′ non-coding region of plum pox virus are not necessary for viral infectivity but contribute to competitiveness and pathogenesis. Virology 233:157–162 [CrossRef]
    [Google Scholar]
38. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
39. Tomimura K., Gibbs A. J., Jenner C. E., Walsh J. A., Ohshima K. 2003; The phylogeny of Turnip mosaic virus; comparisons of 38 genomic sequences reveal a Eurasian origin and a recent ‘emergence’ in east Asia. Mol Ecol 12:2099–2111 [CrossRef]
    [Google Scholar]
40. Urcuqui-Inchima S., Haenni A. L., Bernardi F. 2001; Potyvirus proteins: a wealth of functions. Virus Res 74:157–175 [CrossRef]
    [Google Scholar]
41. Ward C. W., Weiller G. F., Shukla D. D., Gibbs A. 1995; Molecular systematics of the Potyviridae, the largest plant virus family. In Molecular Basis of Virus Evolution pp  477–500 Edited by Gibbs A. J., Calisher C. H., Garcia-Arenal F. Cambridge: Cambridge University Press;
    [Google Scholar]
42. Weiller G. F. 1998; Phylogenetic profiles: a graphical method for detecting genetic recombinations in homologous sequences. Mol Biol Evol 15:326–335 [CrossRef]
    [Google Scholar]
43. Wetzel T., Candresse T., Ravelonandro M., Delbos R. P., Mazyad H., Aboul-Ata A. E., Dunez J. 1991; Nucleotide sequence of the 3′-terminal region of the RNA of the El Amar strain of plum pox potyvirus. J Gen Virol 72:1741–1746 [CrossRef]
    [Google Scholar]
44. Wetzel T., Candresse T., Macquaire G., Ravelonandro M., Dunez J. 1992; A highly sensitive immunocapture polymerase chain reaction method for plum pox potyvirus detection. J Virol Methods 39:27–37 [CrossRef]
    [Google Scholar]
45. Worobey M., Holmes E. C. 1999; Evolutionary aspects of recombination in RNA viruses. J Gen Virol 80:2535–2543
    [Google Scholar]