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Interactome Mapping of the Phosphatidylinositol 3-Kinase-Mammalian Target of Rapamycin Pathway Identifies Deformed Epidermal Autoregulatory Factor-1 as a New Glycogen Synthase Kinase-3 Interactor*

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The phosphatidylinositol 3-kinase-mammalian target of rapamycin (PI3K-mTOR) pathway plays pivotal roles in cell survival, growth, and proliferation downstream of growth factors. Its perturbations are associated with cancer progression, type 2 diabetes, and neurological disorders. To better understand the mechanisms of action and regulation of this pathway, we initiated a large scale yeast two-hybrid screen for 33 components of the PI3K-mTOR pathway. Identification of 67 new interactions was followed by validation by co-affinity purification and exhaustive literature curation of existing information. We provide a nearly complete, functionally annotated interactome of 802 interactions for the PI3K-mTOR pathway. Our screen revealed a predominant place for glycogen synthase kinase-3 (GSK3) A and B and the AMP-activated protein kinase. In particular, we identified the deformed epidermal autoregulatory factor-1 (DEAF1) transcription factor as an interactor and in vitro substrate of GSK3A and GSK3B. Moreover, GSK3 inhibitors increased DEAF1 transcriptional activity on the 5-HT1A serotonin receptor promoter. We propose that DEAF1 may represent a therapeutic target of lithium and other GSK3 inhibitors used in bipolar disease and depression.

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*

This work was supported in part by Association de Recherche sur le Cancer Grant 3853.

This article contains supplemental Figs. 1 and 2, Data 1 and 2, Tables I and II, and materials and methods.

1

The abbreviations used are:

    PI3K

    phosphatidylinositol 3-kinase

    ABI1

    Abelson interactor protein-1

    AD

    activation domain

    AKT

    protein kinase B

    AMPK

    AMP-activated kinase

    APPL1

    adaptor protein-containing pleckstrin homology domain, phosphotyrosine binding domain, and leucine zipper motif

    ARHGEF11

    Rho guanine nucleotide exchange factor (GEF) 11

    BHLHB2/DEC1

    basic helix-loop-helix domain-containing, class B, 2

    CK2

    casein kinase 2

    CKIP1/PLEKHO1

    pleckstrin homology domain-containing, family O member 1

    co-AP

    co-affinity purification

    CPE

    carboxypeptidase E

    DB

    DNA binding domain

    DEAF1/NUDR

    deformed epidermal autoregulatory factor-1

    EAAT4

    excitatory amino acid transporter 4

    GLUT4

    glucose transporter 4

    GSK3

    glycogen synthase kinase 3

    HIS3

    imidazoleglycerol-phosphate dehydratase

    5-HT

    5-hydroxytryptamine (serotonin)

    5-HT1A

    serotonin receptor 1A

    hVps15

    human vacuolar protein sorting 15 or phosphoinositide 3-kinase, class 3, regulatory subunit

    hVps34

    human vacuolar protein sorting 34 or phosphoinositide 3-kinase, class 3, catalytic subunit

    IGF1

    insulin-like growth factor 1

    IP

    immunoprecipitation

    IRS

    insulin receptor substrate

    KIF1C

    kinesin family member 1C

    lacZ

    β-d-galactosidase LacZ

    LZTS2

    leucine zipper, putative tumor suppressor 2

    MAPK

    mitogen-activated protein kinase

    MO25

    calcium-binding protein 39

    MTM1

    myotubularin 1

    mTOR

    mammalian target of rapamycin, subunit 1

    PDK1

    3-phosphoinositide-dependent protein kinase

    PPI

    protein-protein interaction

    PRKAA1

    5′-AMP-activated protein kinase, catalytic α-1 chain

    RC3H1/Roquin

    ring finger and CCCH-type zinc finger domains 1

    RHEB

    Ras homolog enriched in brain

    RHEBL1

    Ras homolog enriched in brainlike 1

    S6K

    ribosomal protein S6 kinase

    SGK1

    serum/glucocorticoid-regulated kinase 1

    SHIP

    SH2-containing inositol phosphatase

    SPG21/Maspardin

    spastic paraplegia 21

    STK11/LKB1

    serine/threonine kinase 11

    TNFR1

    tumor necrosis factor receptor superfamily, member 1

    TRAF2

    tumor necrosis factor receptor-associated factor 2

    TSC

    tuberous sclerosis

    URA3

    orotidine-5′-phosphate decarboxylase

    Y2H

    yeast two-hybrid

    ZBED3

    zinc finger, BED domain-containing 3

    PMID

    PubMed Unique Identifier

    GFP

    green fluorescent protein

    aa

    amino acids.

§

Supported by an Association Française contre les Myopathies grant. Present address: UMR955 Inst. National de la Recherche Agronomique, Ecole Nationale Vétérinaire d'Alfort, 7 ave. du Général de Gaulle, F-94700 Maisons-Alfort, France.

§§

Both authors contributed equally to this work.