Issue 7, 2016

Complexity in structure-directed prebiotic chemistry. Unexpected compositional richness from competing reactants in tetrapyrrole formation

Abstract

Robustness is a key feature of any credible prebiotic reaction process. Two studies are presented concerning the role of analogous yet defective reactants (spanning a range of reactivity) in a model for the prebiogenesis of tetrapyrrole macrocycles in aqueous solution under mild conditions. The reaction entails condensation of an α-aminoketone (e.g., δ-aminolevulinic acid) with a 1,5-dimethoxypentan-2,4-dione bearing a 3-acetic acid unit (β-diketone 1-AcOH) to form a porphobilinogen analogue, which self-condenses to form a mixture of porphyrinogens. Here, the inclusion of an analogous β-diketone lacking the acetic acid substituent (1,5-dimethoxypentan-2,4-dione, 1-H) formed a partially defective (weakly reactive) pyrrole, which upon combinatorial reaction with the normal pyrrole (derived from 1-AcOH) severely crimped the yield of the latter yet all porphyrinogens derivable from both β-diketones 1-H and 1-AcOH were observed upon mass spectrometric analysis. Detection of the porphyrinogens by mass spectrometry revealed a compositional richness beneath the limits of detection by routine absorption spectroscopy. A similar reaction of 1-amino-2-butanone and 1,5-dimethoxy-3-methylpentan-2,4-dione in aqueous micelles leading to etioporphyrinogens was examined in the presence of four β-diketones. Linear offsets of yield as well as combinatorial inhibition were observed depending on the dione structure. Taken together, the results provide a nuanced, quantitative view of the effects of reactant analogues in a chemical model of a structure-directed prebiotic process. The adverse effects of such reactant analogues provide a cautionary tale about the viability of structure-directed processes as a sole means for creation of architecturally complex molecules in a primordial broth.

Graphical abstract: Complexity in structure-directed prebiotic chemistry. Unexpected compositional richness from competing reactants in tetrapyrrole formation

Supplementary files

Article information

Article type
Paper
Submitted
18 Feb 2016
Accepted
09 May 2016
First published
25 May 2016

New J. Chem., 2016,40, 6421-6433

Complexity in structure-directed prebiotic chemistry. Unexpected compositional richness from competing reactants in tetrapyrrole formation

R. M. Deans, M. Taniguchi, V. Chandrashaker, M. Ptaszek, D. R. Chambers, A. R. M. Soares and J. S. Lindsey, New J. Chem., 2016, 40, 6421 DOI: 10.1039/C6NJ00543H

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