Abstract
Leber hereditary optic neuropathy (LHON) is a mitochondrially inherited form of visual dysfunction caused by mutations in several genes encoding subunits of the mitochondrial respiratory NADH-ubiquinone oxidoreductase complex (complex I). Development of gene therapies for LHON has been impeded by genetic heterogeneity and the need to deliver therapies to the mitochondria of retinal ganglion cells (RGCs), the cells primarily affected in LHON. The therapy under development entails intraocular injection of a nuclear yeast gene NADH-quinone oxidoreductase (NDI1) that encodes a single subunit complex I equivalent and as such is mutation independent. NDI1 is imported into mitochondria due to an endogenous mitochondrial localisation signal. Intravitreal injection represents a clinically relevant route of delivery to RGCs not previously used for NDI1. In this study, recombinant adenoassociated virus (AAV) serotype 2 expressing NDI1 (AAV-NDI1) was shown to protect RGCs in a rotenone-induced murine model of LHON. AAV-NDI1 significantly reduced RGC death by 1.5-fold and optic nerve atrophy by 1.4-fold. This led to a significant preservation of retinal function as assessed by manganese enhanced magnetic resonance imaging and optokinetic responses. Intraocular injection of AAV-NDI1 overcomes many barriers previously associated with developing therapies for LHON and holds great therapeutic promise for a mitochondrial disorder for which there are no effective therapies.
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Introduction
Leber hereditary optic neuropathy (LHON) is a maternally inherited disorder affecting 1/25 000 people, predominantly males.1 Loss of central vision results from degeneration of the retinal ganglion cell (RGC) layer and optic nerve.2 In over 95% of patients the genetic pathogenesis of LHON involves mutations in genes encoding components of the mitochondrial respiratory NADH-ubiquinone oxidoreductase complex3 (complex I), involved in transfer of electrons from NADH to ubiquinone (coenzyme Q). Complex I is composed of 46 subunits, 7 of which are encoded by the mitochondrial genome, ND1-6 and ND4L. Mutations in five mitochondrially encoded subunits, ND1, ND4, ND4L, ND5 and ND6, are associated with LHON (http://www.mitomap.org/MITOMAP). There is growing evidence that mitochondrial dysfunction may be involved in a range of neurodegenerative disorders such as Alzheimer disease (AD), Huntington disease and dominant optic atrophy.4 It is not surprising that the retina with the most significant energy requirements of any mammalian tissue5 may be particularly vulnerable to mitochondrial dysfunction. However, such a dependency on energy may provide an opportunity for development of therapeutic interventions where a shift in energy metabolism may give rise to beneficial effects. Complex I dysfunction results in an increase of reactive oxygen species and a decreased energy supply.6 ATP synthesis is coupled to oxygen consumption by the proton electrochemical gradient established across the mitochondrial inner membrane during oxidative phosphorylation7 (OXPHOS). Mitochondrial complex I mutations leading to respiratory chain dysfunction are linked to reduced oxygen consumption, a measure of overall mitochondrial activity.
Development of gene therapies for LHON has been impeded by a need to deliver therapies to mitochondria and the presence of intragenic heterogeneity. In this study, these impediments have been overcome using a nuclear gene NADH-quinone oxidoreductase (NDI1) from yeast (Saccharomyces cerevisiae) encoding a single subunit complex I equivalent, which is imported into mitochondria.8 A nuclear complementation approach using NDI1 has been considered as a potential therapy for Parkinson’s disease (PD).9 In addition, recombinant adenoassociated virus (AAV) serotype 5 delivery of NDI1 into the optic layer of the superior colliculus of the brain has recently been shown to provide benefit in a chemically induced rat model of LHON.10 Although this represents an innovative strategy making use of transkingdom gene therapy, the mode of delivery is unlikely to be translatable to human LHON patients.
Given a scarcity of transgenic models for mitochondrial disorders11 chemically induced models, based on the specific and irreversible complex I inhibitor rotenone, have been used in studies of PD, AD and LHON.12, 13, 14, 15, 16 Rotenone inhibits the reduction of ubiquinone and when administered intravitreally to mice, causes biochemical, structural and functional retinal deficits resembling those observed in LHON patients, notably loss of RGCs and degeneration of the optic nerve.15, 16, 17
In this study, intraocular delivery of NDI1 has been used to protect RGCs in a rotenone-induced murine model of LHON. Recombinant AAV serotype 2 (AAV2/2) expressing NDI1 from a CMV promoter (AAV-NDI1) was administered to mice using a single intravitreal injection. AAV2/2 administered through this route has been shown to infect RGCs efficiently,18, 19, 20 resulting in a broad area of retinal transduction as the vitreous contacts the entire underlying retinal surface.21 Intravitreal injection of AAV provides a route of administration for the gene therapy, which is directly applicable to human patients and is routinely used to administer drugs such as Avastin and Lucentis for wet AMD. In summary, intravitreal injection of AAV-NDI1 significantly reduced RGC death and optic nerve atrophy seen in untreated eyes and led to a preservation of retinal function as assessed by manganese (Mn2+) enhanced magnetic resonance imaging (MEMRI) and optokinetic responses (OKR).
Materials and methods
AAV production
Yeast NDI1 (accession no.: NM_001182483.1) was cloned as described22 downstream of the CMV immediate early promoter (pcDNA3.1-, Invitrogen, Paisley, UK) with a minimal poly-adenylation signal23 to create pAAV-NDI; Supplementary Figure 1. pAAV-EGFP was cloned as described.24 Recombinant AAV2/2 viruses, AAV-ND1 and AAV-EGFP were generated by the Gene Vector production Centre of Nantes. Genomic titres were determined as described.24
Mitochondrial isolation, western blot and respiratory analysis
Mitochondria were isolated from HeLa cells using Anti-TOM22 microbeads (Mitochondria isolation kit, Miltenyi Biotec GmbH, Bergisch Gladbach, Germany) and western blot and respiratory analysis performed as described in Supplementary Text.
Animals, intravitreal injections and histology
Wild-type 129 S2/SvHsd (Harlan UK Ltd, Oxfordshire, UK) mice were maintained under specific pathogen-free housing conditions. Intravitreal injections were carried out in strict compliance with the European Communities Regulations 2002 and 2005 (Cruelty to Animals Act) and the Association for Research in Vision and Ophthalmology statement for the use of animals. Adult mice were anaesthetised and pupils dilated as described.25 Using topical anaesthesia (Amethocaine), a small puncture was made in the sclera. A 34-gauge blunt-ended microneedle attached to a 10-μl Hamilton syringe was inserted through the puncture, and 0.6 μl 2.5 mM rotenone (1.5 nmol) in dimethyl sulfoxide (DMSO, vehicle), 0.6 μl DMSO alone or 3 μl 1 × 1012 vp/ml AAV2/2 was slowly, over a 2-min period, administered into the vitreous. Following intravitreal injection, an anaesthetic reversing agent (100 mg/10 g body weight; atipamezole hydrochloride) was delivered by intraperitoneal injection. Body temperature was maintained using a homoethermic heating device. Animals were killed as described in the results. Eyes were processed for RNA extraction or light and electron microscopy analysis, and optic nerves were processed for light and electron microscopy as described24, 26, 27 (Supplementary Text).
Magnetic resonance imaging
Optic nerve integrity in experimental and control mice was assessed by MEMRI28, 29, 30, 31 using a 7-T Bruker Biospec 70/30 magnet (Bruker Biospin, Etlingen, Germany). MEMRI demarcates active regions of the brain due to the ability of Mn2+ ions to enter excitable cells through voltage-gated calcium channels,28 thus analysis of Mn2+ transport through the optic nerve provides a good measure of its integrity. Two hours before scanning, mice were anaesthetised and intravitreally injected, as described, with 2 μl of 20 mg/ml manganese chloride (MnCl2) in phosphate buffered saline (PBS). The MnCl2 dose used was comparable to previous studies.30, 31 Log signal intensities from MRI scans corresponding to the region immediately superior to the optic chiasm were quantified using the Image J software32 (http://imagej.nih.gov/ij/) (Supplementary Text).
Optokinetics
OKR spatial frequency thresholds were measured blind by two independent researchers using a virtual optokinetic system (VOS, OptoMotry, CerebralMechanics, Lethbridge, Alberta, Canada) as described33 (Supplementary Text).
Statistical analysis
Data sets of treated and untreated samples were pooled, averaged and SD values calculated. Statistical significance of differences between data sets was determined by either Student’s two-tailed t-test or analysis of variance (ANOVA) used with Tukey’s multiple comparison post hoc test. In addition, the Kruskall–Wallis one-way ANOVA was applied to the MRI data set and Mann–Whitney U-tests were undertaken on all other data sets to establish that statistical significance was maintained using nonparametric statistical models. Analysis was performed using the Prism v. 5.0c (GraphPad Software, La Jolla, CA, USA); differences of P<0.05 were considered statistically significant.
Results
The focus of this study was to determine whether NDI1 could rescue the complex I deficiency in a mouse model of LHON using a clinically relevant mode of delivery, intravitreal injection and an AAV serotype previously used in human clinical trials for another retinal disorder (Leber congenital amaurosis (LCA)). Central to the approach was the hypothesis that AAV2/2-mediated intravitreal delivery of the nuclear-encoded gene NDI1 would result in therapeutically relevant levels of Ndi1 protein within RGC mitochondria. Owing to the low number of RGCs present in murine retina (∼60 000 RGCs in 129/J mice34) mitochondrial localisation of Ndi1 expressed from pAAV-NDI1 was initially confirmed in HeLa cells by western blot analysis (56 KDa;35 Supplementary Figure 2A). In addition, the ability of the NDI1 transgene to protect cells from the effects of complex I inhibition following rotenone administration was assessed by analysis of oxygen consumption rates in transfected HeLa cells with and without rotenone treatment (Supplementary Figures 2B and C). As OXPHOS is the primary cause of oxygen consumption in mammalian cells, quantification of overall oxygen consumption provides an indirect measurement of mitochondrial activity. Respiratory measurements of control cells with and without rotenone were 16.85±5.73 pmol/(s × ml) and 62.17±10.73 pmol/(s × ml), respectively, giving a rotenone insensitive respiration percentage of 27.14±7.84%. In comparison, the percentage of rotenone insensitive respiration from AAV-NDI1-transfected cells was over 2.5-fold greater, 72.37±9.85% (P<0.001, n=6; 61.81±10.94 pmol/(s × ml) and 85.54±11.36 pmol/(s × ml) with and without rotenone, respectively). These data suggest that AAV-NDI1 provides significant protection from rotenone inhibition. Subsequent to evaluation of AAV-NDI1 in vitro, 3 × 109 vp AAV-NDI1 or 3 × 109 vp AAV-EGFP were intravitreally injected into adult mice and 2 weeks post-injection retinas were harvested and RNA extracted (n=6). In vivo expression of NDI1 mRNA was confirmed by RT-PCR (Supplementary Figure 2D).
Intravitreal injection of AAV2/2 mediates efficient transgene delivery to RGCs,18, 19, 20 with optimal expression obtained 3 weeks post-injection.18, 19 Initially, this was verified using AAV2/2-EGFP. Adult wild-type mice were intravitreally injected with 3 × 109 vp AAV-EGFP (n=3). Three weeks post-injection, retinas were analysed for the presence of EGFP and widespread expression of EGFP in the ganglion cells was detected (Figure 1). In addition to the cell bodies, a large number of EGFP-positive processes in the inner plexiform layer were also detected (Figures 1c and f). Ganglion cell axons were also positive for EGFP, these axons were readily detected both on the inner surface of the retina and in the optic nerve (Figures 1b and e). Furthermore, interneurons in the inner nuclear layer were also transduced by AAV2/2-EGFP (Figures 1b). The breadth and intensity of EGFP expression detected resulted in 3 × 109 vp AAV being used in the subsequent studies.
To establish if AAV-mediated NDI1 levels in RGCs were sufficient to protect against rotenone insult, adult wild-type mice were intravitreally injected into contralateral eyes with 3 × 109 vp AAV-NDI1 (and 3 × 108 vp AAV-EGFP, to facilitate identification of transduced regions of the retina) or with 3 × 109 vp AAV-EGFP alone (n=4). Three weeks post-injection, 1.5 nmol of rotenone was administered intravitreally to both eyes. Rotenone was added at this timepoint to ensure maximal expression of Ndi1 in RGCs.18, 19 Three weeks post-rotenone treatment retinal morphology was analysed (Figure 2). Sections from control eyes that had received AAV-EGFP (Figures 2b and d) demonstrated significant RGC degeneration that was not apparent in AAV-NDI1-treated retinas (Figures 2a and c). Notably, RGC counts were significantly greater in AAV-NDI1-treated retinas (88.76±15.18 mm−1) than in AAV-EGFP-treated retinas (57.18±12.79 mm−1; P<0.001, n=4; Figure 2e). As complex I-linked LHON manifests as both a degeneration of the RGCs and optic nerve,17 it was important to examine whether the protection afforded to RGCs by AAV-NDI1 was also exhibited in the optic nerve. Optic nerves from mice, which had received AAV-NDI1 in one eye and AAV-EGFP in the other and subsequently rotenone in both eyes (as above), were compared using transmission electron microscopy 3 weeks post-rotenone injection. At low-magnification uncharacteristic electron-dense structures not seen in non-rotenone-treated optic nerves (Supplementary Figure 3) were observed in rotenone-treated optic nerves (arrow heads, Figures 3a and b). These were less abundant in AAV-NDI1-treated optic nerves (Figure 3a) compared with AAV-EGFP-treated optic nerves (Figure 3b). At higher magnification the electron-dense structures were revealed to be disorganised membrane debris (Figure 3c), indicating that AAV-NDI1 treatment had provided protection from degeneration to the optic nerves. Numbers of electron-dense structures were significantly less abundant in AAV-NDI1-treated mice (264.0±72.9) compared with control, AAV-EGFP-treated mice (588.7±29.8; P<0.01, n=3; Figure 3d). To analyse long-term changes to the optic nerve post-treatment, optic nerves were collected 9 months post-rotenone injection from AAV-NDI1- and AAV-EGFP-treated mice. The thickness of the optic nerves was assessed in sections by light microscopy. The mean diameter of the optic nerves was significantly greater in AAV-NDI1-treated mice than in mice treated with AAV-EGFP (336.6±14.5 and 247.7±56.7 μm, respectively; P<0.01, n=3; Figure 3e). These data demonstrate that intravitreal administration of AAV-NDI1 provided significant morphological protection to both the retina and optic nerve from rotenone-induced complex I inhibition.
To determine whether the morphological protection afforded by AAV-NDI1 translated into greater functional integrity in the LHON model, MEMRI was undertaken. MEMRI demarcates active regions of the brain due to the ability of Mn2+ to enter excitable cells through voltage-gated calcium channels28 and hence provides insights into the integrity of calcium channels. Adult mice were intravitreally injected in one eye with 3 × 109 vp AAV-NDI1 (n=10). Three weeks post-injection, 1.5 nmol of rotenone was administered intravitreally to the same eye. A further group of adult animals received either an intravitreal injection of 1.5 nmol of rotenone (n=10) or vehicle alone (DMSO, n=10) in one eye. One week post-rotenone (or DMSO) administration mice were given 40 μg of MnCl2 intravitreally (20 mg/ml in PBS) into the treated eye and optic nerve function was analysed by measuring MEMRI signal 2 h later (Figure 4). MEMRI signals in mice that had received rotenone (Figure 4c) showed significantly decreased contrasting in the optic nerve region immediately superior to the optic chiasms (green) in comparison with control mice administered with DMSO alone (Figure 4a, 2.2864±0.067 and 2.376±0.044 units, respectively, P<0.001, n=10). The reduction in MEMRI signal intensity suggests that the rotenone-induced damage to the RGCs observed previously using histological assays (Figure 2) may have blocked the active transport of Mn2+ using calcium channels in the optic nerve cells. In contrast to rotenone mice, mice injected with both AAV-NDI1 and rotenone displayed significantly more contrasting of the optic chiasm (Figure 4b, 2.3494±0.068 units, P<0.01, n=10). This was comparable to levels seen in control mice that had received DMSO alone (2.376±0.044 units, n=10), suggesting that intravitreal administration of AAV-NDI1 was beneficial for optic nerve function.
In addition, we explored whether the histological and functional benefits obtained with AAV-NDI1 in this model of LHON in the retina and optic nerve translated to improved spatial vision. Contralateral eyes of adult mice were intravitreally injected with 3 × 109 vp AAV-NDI1 or 3 × 109 vp AAV-EGFP (n=8). Three weeks post-injection, 1.5 nmol of rotenone was administered intravitreally to both eyes. OKR were measured33 and the spatial frequency threshold, the point at which an animal no longer tracks the moving grating, was established separately for eyes treated with either AAV-NDI1 or control eyes treated with AAV-EGFP, 3 months post-rotenone treatment (Figure 5). AAV-NDI1-treated eyes displayed significantly better optokinetic tracking responses than those treated with AAV-EGFP (0.384±0.021 and 0.271±0.034 cyc/deg, respectively, P<0.001, n=8). Indeed the spatial frequency of eyes treated with AAV-NDI1 and rotenone mirrored that of eyes treated with virus alone (AAV-NDI1; 0.3870±0.017 or AAV-EGFP; 0.403±0.016). These data demonstrate that intravitreal administration of AAV-NDI1 not only provided morphological and functional benefit, but also preserved mouse vision in the presence of the complex I inhibitor rotenone.
Discussion
LHON is a debilitating and currently untreatable retinal degeneration. The development of gene therapies for LHON has been hampered by the mitochondrial mode of inheritance, intragenic heterogeneity, the need to deliver a therapy to the RGC layer and a scarcity of animal models for the disease.11 With regard to the latter, novel mitochondrial gene replacement methodologies in stem cells may aid with the developing animal models for mitochondrial diseases in the future.36 Rotenone has been used to generate chemically induced models for a number of disorders, including PD, AD and LHON.12, 13, 14, 15, 16 As demonstrated in this study, intravitreal injection of 1.5 nmol of rotenone into wild-type (129S2/SvHsd) miceinduced RGC loss, optic nerve degeneration and significantly affected visual function, as assessed by MEMRI and OKR, simulating many features of human LHON (see controls in Figures 2, 3, 4, 5).
NDI1, a nuclear-encoded yeast equivalent to mammalian complex I, has been proposed as a potential therapeutic for diseases associated with complex I dysfunction, including PD and LHON.9, 10 AAV-NDI1 appears to be well tolerated in rat brain and muscle as no detectable quantity of anti-Ndi1 antibody was present in sera 6 months post-injection.37 Although previous studies demonstrate the potential of NDI1-based therapies for LHON, injection of the viral therapy directly into the brain is unlikely to be readily translatable to human LHON patients. In contrast, intravitreal AAV-NDI1 delivery, as explored in this study, represents a directly translatable clinical approach.
We describe a mutation-independent therapy for LHON utilising NDI1, which overcomes intragenic heterogeneity and is delivered directly to the target RGCs by intravitreal injection. AAV2/2 was the vector of choice as this serotype transduces RGCs efficiently.18, 19, 20 Of note, AAV2/2 expressing the RPE65 gene has been used in human clinical trials for LCA and has been shown to be well tolerated in the human eye38, 39, 40, 41, 42 for over 3 years post-treatment. In this study, intravitreal injection of AAV-NDI1 provided substantial protection against rotenone-induced insult (Figures 2, 3, 4, 5). Notably, histological analyses demonstrated significant protection of both RGCs and the optic nerve (Figures 2 and 3). Furthermore, MEMRI indicated that AAV-NDI1 treatment preserved optic nerve function by enabling active transport of Mn2+ through the optic nerve using voltage-gated calcium channels and hence provided evidence of improved functional integrity of the optic nerve tissue in AAV-NDI1-treated eyes compared with control eyes (Figure 4). Evaluation of visual function by optokinetics showed that the protection of RGCs and optic nerve integrity afforded by AAV-NDI1 led to preservation of mouse vision in the presence of the rotenone (Figure 5). The results highlight the potential therapeutic value of NDI1-based therapies for LHON when intravitreally delivered using AAV2/2.
Alternative therapeutic approaches are being considered for LHON. For example, preclinical studies in which benefit was demonstrated have been undertaken for a ND4-related LHON gene therapy.43 Introduction of the human ND4 gene harbouring the G11778A mutation by electroporation43 or AAV44 to the murine vitreal cavity resulted in a phenotype similar to LHON. Subsequent electroporation with a wild-type ND4 gene prevented RGC loss and visual impairment.43 It will be of value to establish if addition of wild-type ND4 to human ND4-linked LHON patients many of whom do not express any wild-type ND4 in RGCs, unlike the murine models, will be therapeutically beneficial.45 Screening of LHON patients for ND4 mutations is being undertaken in the University of Miami in preparation for clinical trials, planned to commence within the next 4 years.46
As for many neurodegenerative disorders a variety of neurotrophic factors and anti-oxidants are being explored as therapies.47, 48, 49, 50, 51 Santhera’s quinone-based drug termed idebenone (a coenzyme Q10 analogue), initially targeted towards AD and Duchenne Muscular Dystrophy is currently in a Phase III trial for LHON.48 Although the beneficial effects thus far may be somewhat modest, to patients suffering the devastating vision loss characteristic of LHON, they are welcome. In addition, an array of neuroprotective agents and anti-oxidants such as memantine and valproic acid49, 50, 51 are being considered as treatments for LHON and other optic nerve degenerations.
In this study, AAV-NDI1 was used to treat a murine model of LHON and significant benefit demonstrated using both histological and functional assays. A clear advantage of using the NDI1 gene over allotopic expression of mammalian mitochondrial complex I subunit genes as a therapy for LHON is that a single gene may provide benefit to all LHON patients with a complex I deficiency irrespective of which complex I subunit gene is causative of this debilitating retinopathy. In addition, unlike these complex I subunit genes, NDI1 is expressed in the nucleus of yeast and contains an endogenous MLS to facilitate import of protein into mitochondria. Hence, transport of Ndi1 protein to mitochondria is naturally optimised and may be more efficient than transport of allotopically expressed therapeutic genes with introduced MLSs. Of note, intravitreal administration of AAV-NDI1, which efficiently transduces RGCs, may be directly applicable to human patients with LHON, given that AAV2 is well tolerated in the human eye38, 39, 40, 41, 42 and intravitreal injection in humans is a routine procedure.52 A tissue-specific promoter may be used in future studies to further enhance the therapy. In summary, the data obtained from the study represent a significant step in progressing AAV2-NDI1-based therapeutics towards the clinic for this debilitating mitochondrially inherited eye disorder, which typically affects young males in their most productive years.
Accession codes
References
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Acknowledgements
We thank Dr Christian Kerskens (Trinity College Dublin) for his advice with MRI experiments, Prof Richard Porter and Lars Manzke (Trinity College Dublin) for their advice on respiratory analysis experiments, Gavin MacManus (Trinity College Dublin) for assistance with confocal microscopy, the staff of the Bioresources Unit (Trinity College Dublin) and Elisabeth Sehn (Johannes Gutenberg University) for skilful technical assistance. The research was supported by grant awards from Fighting Blindness Ireland, Science Foundation Ireland, Irish Research Council for Science, Engineering & Technology, Deutsche Forschungsgemeinschaft (GRK1044), FAUN-Stiftung and BMBF ‘Hope’.
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GJF and PK are directors of Genable Technologies; SM-W, NC, AP and MO’R are consultants for Genable Technologies. The remaining authors declare no conflict of interest.
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Chadderton, N., Palfi, A., Millington-Ward, S. et al. Intravitreal delivery of AAV-NDI1 provides functional benefit in a murine model of Leber hereditary optic neuropathy. Eur J Hum Genet 21, 62–68 (2013). https://doi.org/10.1038/ejhg.2012.112
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DOI: https://doi.org/10.1038/ejhg.2012.112
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