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miR-499 regulates mitochondrial dynamics by targeting calcineurin and dynamin-related protein-1

Abstract

Myocardial infarction is a leading cause of mortality worldwide. Here we report that modulation of microRNA-499 (miR-499) levels affects apoptosis and the severity of myocardial infarction and cardiac dysfunction induced by ischemia-reperfusion. We found that both the α- and β-isoforms of the calcineurin catalytic subunit are direct targets of miR-499 and that miR-499 inhibits cardiomyocyte apoptosis through its suppression of calcineurin-mediated dephosphorylation of dynamin-related protein-1 (Drp1), thereby decreasing Drp1 accumulation in mitochondria and Drp1-mediated activation of the mitochondrial fission program. We also found that p53 transcriptionally downregulates miR-499 expression. Our data reveal a role for miR-499 in regulating the mitochondrial fission machinery and we suggest that modulation of miR-499 levels may provide a therapeutic approach for treating myocardial infarction.

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Figure 1: miR-499 prevents apoptosis and myocardial infarction.
Figure 2: miR-499 transgenic mice are resistant to left ventricular remodeling after ischemia-reperfusion.
Figure 3: CnAα and CnAβ are targets of miR-499.
Figure 4: Drp1 participates in the regulation of mitochondrial fission and apoptosis in cardiomyocytes.
Figure 5: miR-499 regulates mitochondrial fission through calcineurin and Drp1.
Figure 6: p53 transcriptionally downregulates miR-499.

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References

  1. Lee, Y. et al. The nuclear RNase III Drosha initiates microRNA processing. Nature 425, 415–419 (2003).

    Article  CAS  Google Scholar 

  2. Basson, M. MicroRNAs loom large in the heart. Nat. Med. 13, 541 (2007).

    Article  CAS  Google Scholar 

  3. Callis, T.E. & Wang, D.Z. Taking microRNAs to heart. Trends Mol. Med. 14, 254–260 (2008).

    Article  CAS  Google Scholar 

  4. Caré, A. et al. MicroRNA-133 controls cardiac hypertrophy. Nat. Med. 13, 613–618 (2007).

    Article  Google Scholar 

  5. Mann, D.L. MicroRNAs and the failing heart. N. Engl. J. Med. 356, 2644–2645 (2007).

    Article  CAS  Google Scholar 

  6. Thum, T. et al. MicroRNAs in the human heart: a clue to fetal gene reprogramming in heart failure. Circulation 116, 258–267 (2007).

    Article  CAS  Google Scholar 

  7. Chien, K.R. Molecular medicine: microRNAs and the tell-tale heart. Nature 447, 389–390 (2007).

    Article  CAS  Google Scholar 

  8. Tanaka, A. & Youle, R.J. A chemical inhibitor of DRP1 uncouples mitochondrial fission and apoptosis. Mol. Cell 29, 409–410 (2008).

    Article  CAS  Google Scholar 

  9. Suen, D.F., Norris, K.L. & Youle, R.J. Mitochondrial dynamics and apoptosis. Genes Dev. 22, 1577–1590 (2008).

    Article  CAS  Google Scholar 

  10. Youle, R.J. & Karbowski, M. Mitochondrial fission in apoptosis. Nat. Rev. Mol. Cell Biol. 6, 657–663 (2005).

    Article  CAS  Google Scholar 

  11. Frank, S. et al. The role of dynamin-related protein 1, a mediator of mitochondrial fission, in apoptosis. Dev. Cell 1, 515–525 (2001).

    Article  CAS  Google Scholar 

  12. Tan, W.Q. et al. Novel cardiac apoptotic pathway: the dephosphorylation of apoptosis repressor with caspase recruitment domain by calcineurin. Circulation 118, 2268–2276 (2008).

    Article  CAS  Google Scholar 

  13. Wang, H.G. et al. Ca2+–induced apoptosis through calcineurin dephosphorylation of BAD. Science 284, 339–343 (1999).

    Article  CAS  Google Scholar 

  14. Kloosterman, W.P. et al. Cloning and expression of new microRNAs from zebrafish. Nucleic Acids Res. 34, 2558–2569 (2006).

    Article  CAS  Google Scholar 

  15. Tang, X. et al. A simple array platform for microRNA analysis and its application in mouse tissues. RNA 13, 1803–1822 (2007).

    Article  CAS  Google Scholar 

  16. Kim, H.J., Cui, X.S., Kim, E.J., Kim, W.J. & Kim, N.H. New porcine microRNA genes found by homology search. Genome 49, 1283–1286 (2006).

    Article  CAS  Google Scholar 

  17. van Rooij, E. et al. A family of microRNAs encoded by myosin genes governs myosin expression and muscle performance. Dev. Cell 17, 662–673 (2009).

    Article  CAS  Google Scholar 

  18. Kusano, K.F. et al. Sonic hedgehog myocardial gene therapy: tissue repair through transient reconstitution of embryonic signaling. Nat. Med. 11, 1197–1204 (2005).

    Article  CAS  Google Scholar 

  19. Foo, R.S., Mani, K. & Kitsis, R.N. Death begets failure in the heart. J. Clin. Invest. 115, 565–571 (2005).

    Article  CAS  Google Scholar 

  20. Shibata, R. et al. Adiponectin protects against myocardial ischemia-reperfusion injury through AMPK– and COX-2–dependent mechanisms. Nat. Med. 11, 1096–1103 (2005).

    Article  CAS  Google Scholar 

  21. Harada, M. et al. G-CSF prevents cardiac remodeling after myocardial infarction by activating the Jak-Stat pathway in cardiomyocytes. Nat. Med. 11, 305–311 (2005).

    Article  CAS  Google Scholar 

  22. Li, Y.Z., Lu, D.Y., Tan, W.Q., Wang, J.X. & Li, P.F. p53 initiates apoptosis by transcriptionally targeting the antiapoptotic protein ARC. Mol. Cell. Biol. 28, 564–574 (2008).

    Article  CAS  Google Scholar 

  23. Cribbs, J.T. & Strack, S. Reversible phosphorylation of Drp1 by cyclic AMP-dependent protein kinase and calcineurin regulates mitochondrial fission and cell death. EMBO Rep. 8, 939–944 (2007).

    Article  CAS  Google Scholar 

  24. Cereghetti, G.M. et al. Dephosphorylation by calcineurin regulates translocation of Drp1 to mitochondria. Proc. Natl. Acad. Sci. USA 105, 15803–15808 (2008).

    Article  CAS  Google Scholar 

  25. Sandebring, A. et al. Mitochondrial alterations in PINK1 deficient cells are influenced by calcineurin–dependent dephosphorylation of dynamin-related protein 1. PLoS ONE 4, e5701 (2009).

    Article  Google Scholar 

  26. Molkentin, J.D. Calcineurin and beyond: cardiac hypertrophic signaling. Circ. Res. 87, 731–738 (2000).

    Article  CAS  Google Scholar 

  27. Wilkins, B.J. & Molkentin, J.D. Calcium–calcineurin signaling in the regulation of cardiac hypertrophy. Biochem. Biophys. Res. Commun. 322, 1178–1191 (2004).

    Article  CAS  Google Scholar 

  28. Lin, Z. et al. miR-23a functions downstream of NFATc3 to regulate cardiac hypertrophy. Proc. Natl. Acad. Sci. USA 106, 12103–12108 (2009).

    Article  CAS  Google Scholar 

  29. Zhao, Y., Samal, E. & Srivastava, D. Serum response factor regulates a muscle-specific microRNA that targets Hand2 during cardiogenesis. Nature 436, 214–220 (2005).

    Article  CAS  Google Scholar 

  30. Sano, M. et al. p53–induced inhibition of Hif-1 causes cardiac dysfunction during pressure overload. Nature 446, 444–448 (2007).

    Article  CAS  Google Scholar 

  31. Kannan, K. et al. DNA microarrays identification of primary and secondary target genes regulated by p53. Oncogene 20, 2225–2234 (2001).

    Article  CAS  Google Scholar 

  32. Toth, A. et al. Targeted deletion of Puma attenuates cardiomyocyte death and improves cardiac function during ischemia-reperfusion. Am. J. Physiol. Heart Circ. Physiol. 291, H52–H60 (2006).

    Article  CAS  Google Scholar 

  33. Lim, H.W. & Molkentin, J.D. Calcineurin and human heart failure. Nat. Med. 5, 246–247 (1999).

    Article  CAS  Google Scholar 

  34. de Frutos, S., Spangler, R., Alo, D. & Bosc, L.V. NFATc3 mediates chronic hypoxia-induced pulmonary arterial remodeling with alpha-actin up-regulation. J. Biol. Chem. 282, 15081–15089 (2007).

    Article  CAS  Google Scholar 

  35. Cai, Q., Baxter, G.F. & Yellon, D.M. Reduction of infarct size in isolated rat heart by CsA and FK506: possible role of phosphatase inhibition. Cardiovasc. Drugs Ther. 12, 499–501 (1998).

    Article  CAS  Google Scholar 

  36. Weinbrenner, C., Liu, G.S., Downey, J.M. & Cohen, M.V. Cyclosporine A limits myocardial infarct size even when administered after onset of ischemia. Cardiovasc. Res. 38, 678–684 (1998).

    Article  Google Scholar 

  37. van Rooij, E., Marshall, W.S. & Olson, E.N. Toward microRNA-based therapeutics for heart disease: the sense in antisense. Circ. Res. 103, 919–928 (2008).

    Article  CAS  Google Scholar 

  38. Zhao, Y. et al. Dysregulation of cardiogenesis, cardiac conduction, and cell cycle in mice lacking miRNA-1–2. Cell 129, 303–317 (2007).

    Article  CAS  Google Scholar 

  39. Yang, B. et al. The muscle-specific microRNA miR-1 regulates cardiac arrhythmogenic potential by targeting GJA1 and KCNJ2. Nat. Med. 13, 486–491 (2007).

    Article  CAS  Google Scholar 

  40. Corsten, M.F. et al. MicroRNA-21 knockdown disrupts glioma growth in vivo and displays synergistic cytotoxicity with neural precursor cell delivered S-TRAIL in human gliomas. Cancer Res. 67, 8994–9000 (2007).

    Article  CAS  Google Scholar 

  41. Chan, J.A., Krichevsky, A.M. & Kosik, K.S. MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells. Cancer Res. 65, 6029–6033 (2005).

    Article  CAS  Google Scholar 

  42. Lee, P. et al. Fas pathway is a critical mediator of cardiac myocyte death and MI during ischemia-reperfusion in vivo. Am. J. Physiol. Heart Circ. Physiol. 284, H456–H463 (2003).

    Article  CAS  Google Scholar 

  43. Nakamura, T. et al. Fas-mediated apoptosis in adriamycin–induced cardiomyopathy in rats: In vivo study. Circulation 102, 572–578 (2000).

    Article  CAS  Google Scholar 

  44. Chao, W., Shen, Y., Li, L. & Rosenzweig, A. Importance of FADD signaling in serum deprivation– and hypoxia–induced cardiomyocyte apoptosis. J. Biol. Chem. 277, 31639–31645 (2002).

    Article  CAS  Google Scholar 

  45. Fujio, Y., Nguyen, T., Wencker, D., Kitsis, R.N. & Walsh, K. Akt promotes survival of cardiomyocytes in vitro and protects against ischemia-reperfusion injury in mouse heart. Circulation 101, 660–667 (2000).

    Article  CAS  Google Scholar 

  46. Wang, L., Ma, W., Markovich, R., Chen, J.W. & Wang, P.H. Regulation of cardiomyocyte apoptotic signaling by insulin-like growth factor I. Circ. Res. 83, 516–522 (1998).

    Article  CAS  Google Scholar 

  47. Pimentel, D.R. et al. Reactive oxygen species mediate amplitude–dependent hypertrophic and apoptotic responses to mechanical stretch in cardiac myocytes. Circ. Res. 89, 453–460 (2001).

    Article  CAS  Google Scholar 

  48. Cheng, W. et al. Stretch–induced programmed myocyte cell death. J. Clin. Invest. 96, 2247–2259 (1995).

    Article  CAS  Google Scholar 

  49. Shizukuda, Y. et al. beta-adrenergic stimulation causes cardiocyte apoptosis: influence of tachycardia and hypertrophy. Am. J. Physiol. 275, H961–H968 (1998).

    CAS  PubMed  Google Scholar 

  50. Fan, G.C. et al. Small heat–shock protein Hsp20 phosphorylation inhibits beta-agonist-induced cardiac apoptosis. Circ. Res. 94, 1474–1482 (2004).

    Article  CAS  Google Scholar 

  51. Kajstura, J. et al. Angiotensin II induces apoptosis of adult ventricular myocytes in vitro. J. Mol. Cell. Cardiol. 29, 859–870 (1997).

    Article  CAS  Google Scholar 

  52. Fisher, P.W., Salloum, F., Das, A., Hyder, H. & Kukreja, R.C. Phosphodiesterase-5 inhibition with sildenafil attenuates cardiomyocyte apoptosis and left ventricular dysfunction in a chronic model of doxorubicin cardiotoxicity. Circulation 111, 1601–1610 (2005).

    Article  CAS  Google Scholar 

  53. van Rooij, E. et al. Dysregulation of microRNAs after myocardial infarction reveals a role of miR-29 in cardiac fibrosis. Proc. Natl. Acad. Sci. USA 105, 13027–13032 (2008).

    Article  CAS  Google Scholar 

  54. Rodriguez, A., Griffiths-Jones, S., Ashurst, J.L. & Bradley, A. Identification of mammalian microRNA host genes and transcription units. Genome Res. 14, 1902–1910 (2004).

    Article  CAS  Google Scholar 

  55. Saini, H.K., Griffiths-Jones, S. & Enright, A.J. Genomic analysis of human microRNA transcripts. Proc. Natl. Acad. Sci. USA 104, 17719–17724 (2007).

    Article  CAS  Google Scholar 

  56. Ozsolak, F. et al. Chromatin structure analyses identify miRNA promoters. Genes Dev. 22, 3172–3183 (2008).

    Article  CAS  Google Scholar 

  57. Tan, W.Q., Wang, K., Lv, D.Y. & Li, P.F. Foxo3a inhibits cardiomyocyte hypertrophy through transactivating catalase. J. Biol. Chem. 283, 29730–29739 (2008).

    Article  CAS  Google Scholar 

  58. Wang, J.X., Li, Q. & Li, P.F. Apoptosis repressor with caspase recruitment domain contributes to the chemotherapy resistance by abolishing mitochondrial fission mediated by dynamin-related protein-1. Cancer Res. 69, 492–500 (2009).

    Article  CAS  Google Scholar 

  59. Elrod, J.W. et al. Hydrogen sulfide attenuates myocardial ischemia-reperfusion injury by preservation of mitochondrial function. Proc. Natl. Acad. Sci. USA 104, 15560–15565 (2007).

    Article  CAS  Google Scholar 

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Acknowledgements

This work was supported by the National Natural Science Foundation of China (30730045, 31010103911) and the National Basic Research Program of China (973 Program, 2007CB512000, 2011CB965300). pαMHC-clone26 was kindly provided by Z. Yang (Nanjing University). CnAα and CnAβ cDNAs were kindly provided by T. Kuno (Kobe University). The antibody to phospho-Drp1 (Ser656) was kindly provided by S. Strack (University of Iowa).

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P.-F.L. and J.-X.W. designed research. J.-X.W. performed cellular experiments. J.-Q.J. conducted animal experiments. Y.-R.L. created 3′ UTR constructs. Q.L. and B.L. constructed adenoviruses and generated miR-499 transgenic mice. J.-P.L. measured calcium. K.W. analyzed hypertrophy. P.-F.L. and J.-X.W. wrote the manuscript.

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Correspondence to Pei-Feng Li.

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Wang, JX., Jiao, JQ., Li, Q. et al. miR-499 regulates mitochondrial dynamics by targeting calcineurin and dynamin-related protein-1. Nat Med 17, 71–78 (2011). https://doi.org/10.1038/nm.2282

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