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Opportunities and challenges in plant chemical biology

Chemical biology is beginning to enhance our understanding of diverse cellular processes in plants, including endomembrane trafficking, hormone transport and cell wall biosynthesis. To reach its potential requires the development of a community-wide infrastructure of technology and expertise. We present some of the opportunities and challenges in this emerging branch of plant biology and offer some suggestions for enhancing the approach to the benefit of the community at large.

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Figure 1: Cellulose microfibrils are one of the primary components of plant cell walls and are composed of 36 hydrogen-bonded β-1,4-linked glucose residues, each produced from a single CESA subunit.
Figure 2: Bioactive chemicals can perturb distinct or intersecting biological pathways.
Figure 3: Bioactive small molecules can dissect rapid cellular processes.
Figure 4: Small molecules can help to define complex cellular networks.
Figure 5: Enhanced microscopy, increased automation and quantification of seedling and cellular-level phenotypic data will drive plant chemical biology toward a more sophisticated, network-oriented view of development by providing access to more quantifiable phenotypes.

References

  1. Cokus, S.J. et al. Nature 452, 215–219 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Ossowski, S. et al. Genome Res. 18, 2024–2033 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Blackwell, H.E. & Zhao, Y. Plant Physiol. 133, 448–455 (2003).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Robert, S., Raikhel, N.V. & Hicks, G.R. in The Arabidopsis Book (American Society of Plant Biologists, Rockville, Maryland, USA, 2009).

    Google Scholar 

  5. Dai, X., Hayashi, K., Nozaki, H., Cheng, Y. & Zhao, Y. Proc. Natl. Acad. Sci. USA 102, 3129–3134 (2005).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  6. Rojas-Pierce, M. et al. Chem. Biol. 14, 1366–1376 (2007).

    Article  CAS  PubMed  Google Scholar 

  7. Zhao, Y. et al. Nat. Chem. Biol. 3, 716–721 (2007).

    Article  CAS  PubMed  Google Scholar 

  8. Walsh, T.A. et al. Plant Physiol. 144, 1292–1304 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Walsh, T.A. et al. Plant Physiol. 142, 542–552 (2006).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Desprez, T. et al. Plant Physiol. 128, 482–490 (2002).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Scheible, W.R., Eshed, R., Richmond, T., Delmer, D. & Somerville, C. Proc. Natl. Acad. Sci. USA 98, 10079–10084 (2001).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Somerville, C. Annu. Rev. Cell Dev. Biol. 22, 53–78 (2006).

    Article  CAS  PubMed  Google Scholar 

  13. DeBolt, S. et al. Proc. Natl. Acad. Sci. USA 104, 5854–5859 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. DeBolt, S., Gutierrez, R., Ehrhardt, D.W. & Somerville, C. Plant Physiol. 145, 334–338 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Feraru, E. & Friml, J. Plant Physiol. 147, 1553–1559 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Titapiwatanakun, B. et al. Plant J. 57, 27–44 (2009).

    Article  CAS  PubMed  Google Scholar 

  17. Borevitz, J.O. & Ecker, J.R. Annu. Rev. Genomics Hum. Genet. 5, 443–477 (2004).

    Article  CAS  PubMed  Google Scholar 

  18. Lukowitz, W., Gillmor, C.S. & Scheible, W.R. Plant Physiol. 123, 795–806 (2000).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  19. Robert, S. et al. Proc. Natl. Acad. Sci. USA 105, 8464–8469 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Girke, T., Cheng, L.C. & Raikhel, N. Plant Physiol. 138, 573–577 (2005).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  21. Cao, Y. et al. Bioinformatics 24, 1733–1734 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Surpin, M. & Raikhel, N. Nat. Rev. Mol. Cell Biol. 5, 100–109 (2004).

    Article  CAS  PubMed  Google Scholar 

  23. Geldner, N., Hyman, D.L., Wang, X., Schumacher, K. & Chory, J. Genes Dev. 21, 1598–1602 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Nebenfuhr, A., Ritzenthaler, C. & Robinson, D.G. Plant Physiol. 130, 1102–1108 (2002).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  25. Geldner, N. et al. Cell 112, 219–230 (2003).

    Article  CAS  PubMed  Google Scholar 

  26. Drakakaki, G., Robert, S., Raikhel, N.V. & Hicks, G.R. Plant Signal. Behav. 4, 57–62 (2009).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Peterson, R.T. Nat. Chem. Biol. 4, 635–638 (2008).

    Article  CAS  PubMed  Google Scholar 

  28. Sarin, S., Prabhu, S., O'Meara, M.M., Pe'er, I. & Hobert, O. Nat. Methods 5, 865–867 (2008).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Mitsopoulos, G., Walsh, D.P. & Chang, Y.T. Curr. Opin. Chem. Biol. 8, 26–32 (2004).

    Article  CAS  PubMed  Google Scholar 

  30. Lewis, D.R., Miller, N.D., Splitt, B.L., Wu, G. & Spalding, E.P. Plant Cell 19, 1838–1850 (2007).

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

N.V.R. and G.R.H. are grateful to the US National Science Foundation (MCB-0520325 and MCB-0817916) for support.

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Hicks, G., Raikhel, N. Opportunities and challenges in plant chemical biology. Nat Chem Biol 5, 268–272 (2009). https://doi.org/10.1038/nchembio0509-268

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