Skip to main content
Log in

Bacillus intermedius Glutamyl Endopeptidase. Molecular Cloning and Nucleotide Sequence of the Structural Gene

  • Published:
Journal of Protein Chemistry Aims and scope Submit manuscript

Abstract

The glutamyl endopeptidase gene of Bacillus intermedius was cloned from a genomic library expressed in Bacillus subtilis and sequenced (EMBL accession number Y15136). The encoded preproenzyme contains 303 amino acid residues; the mature 23-kDa enzyme consists of 215 residues. The mature enzyme reveals 38% of identical residues when aligned with the glutamyl endopeptidase from Bacillus licheniformis, whereas only five invariant residues were found among all known glutamyl endopeptidases. The amino acid residues that form the catalytic triad (H47, D98, and S171) as well as H186 participating in the binding of the substrate carboxyl group were identified. It seems that the structural elements responsible for the function of glutamyl endopeptidases from various sources are highly variable.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

REFERENCES

  • Akimkina, T. V., Nosovskaya, E. A., and Kostrov, S. V. (1992). Molek. Biol. (Mol. Biol. Moscow) 26, 418–423.

    CAS  Google Scholar 

  • Anagnostopoulos, C., and Spizizen, J. (1961). J. Bacteriol. 81, 741–746.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Avakov, A. S., Bolotin, A. P., Kolibaba, L. G., Sorokin, A. V., Shemyakina, T. M., Paberit, M., Raik, H., and Aaviksaar, A. (1990). Molek. Biol. (Mol. Biol. Moscow) 24, 1001–1009.

    CAS  Google Scholar 

  • Barbosa, J. A. R. G., Saldanha, J. W., and Garratt, R. C. (1996). Protein Eng. 9, 591–601.

    Article  CAS  PubMed  Google Scholar 

  • Belyaeva, E. V., Rudenskaja, G. N., Stepanov, V. M., and Degteva, G. K. (1984). Prikl. Biokhim. Mikrobiol. (Appl. Biochem. Microbiol. Moscow) 20, 363–368.

    CAS  Google Scholar 

  • Carmona, C., and Gray, G. L. (1987). Nucleic Acids Res. 15, 6757.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cavarelli, J., Prevost, G., Bourguet, W., Moulinier, L., Chevrier, B., Delagoutte, B., Bilwes, A., Mourey, L., Rifai, S., Piemont, Y., and Moras, D. (1997). Structure 5, 813–824.

    Article  CAS  PubMed  Google Scholar 

  • Dancer, S. J., Garrat, R., Saldanha, J., Jhoti, H., and Evance, R. (1990). FEBS Lett. 268, 129–132.

    Article  CAS  PubMed  Google Scholar 

  • Demidyuk, I. V., Nosovskaya, E. A., Tsaplina, I. A., Karavaiko, G. I., and Kostrov, S. V. (1997). Biokhimiya (Biochemistry Moscow) 62, 171–175.

    CAS  Google Scholar 

  • Drapeau, G. R., Boily, Y., and Houmard, J. (1972). J. Biol. Chem. 247, 6720–6726.

    Article  CAS  PubMed  Google Scholar 

  • Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J. F., Dougherty, B. A., Merrick, J. M., McKenney, K., Sutton, G., Fitz-Hugh, W., Fields, C., Goccayne, J., Scott, J., Sherley, R., Liu, L. I., Glodek, A., Kelley, J. M., Feldman, J. F., Phillips, C. A., Spriggs, T., Hedblom, E., Cotton, M. D., Utterback, T. R., Hanna, M. C., Nguyen, D. T., Saudek, D. M., Brandon, R. C., Fine, L. D., Fritchman, J. L., Fuhrmann, J. L., Geoghagen, N. S. M., Gnehm, C. L., McDonald, L. A., Small, K. V., Fraser, C. M., Smith, H. O., and Venter, J. C. (1995). Science 269,(5223), 496–512.

    Article  CAS  PubMed  Google Scholar 

  • Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., Fritchman, J. L., Weidman, J. F., Small, K. V., Sandusky, M., Fuhrmann, J., Nguyen, D., Utterback, T. R., Saudek, D. M., Phillips, C. A., Merrick, J. M., Tomb, J.-F., Dougherty, B. A., Bott, K. F., Hu, P. C., Lucier, T. S., Peterson, S. N., Smith, H. O., Hutchison III, C. A., and Venter, J. C. (1995). Science 270, 397–403.

    Article  CAS  PubMed  Google Scholar 

  • Kakudo, S., Kikuchi, N., Kitadokoro, K., Fujiwara, T., Nakamura, E., Okamoto, H., Shin, M., Tamaki, M., Teraoka, H., Tsuzuki, H., and Yoshida, N. (1992). J. Biol. Chem. 267, 23782–23788.

    Article  CAS  PubMed  Google Scholar 

  • Khaidarova, N. V., Rudenskaya, G. N., Revina, L. P., Stepanov, V. M., and Egorov, N. S. (1989). Biokhimiya (Biochemistry Moscow) 54, 46–53.

    CAS  Google Scholar 

  • Kitadokoro, K., Nakamuram, E., Tamaki, M., Horii, T., Okamoto, H., Shin, M., Sato, T., Fujiwara, T., Tsuzuki, H., Yoshida, N., and Teraoka, H. (1993). Biochem. Biophys. Acta 1163, 149–157.

    CAS  PubMed  Google Scholar 

  • Laemmli, U. K. (1970). Nature 227, 680–685.

    Article  CAS  PubMed  Google Scholar 

  • Leshchinskaya, I. B., Shakirov, E. V., Itskovich, E. L., Balaban, N. P., Mardanova, A. M., Shapirova, M. R., Blagova, E. V., Levdikov, V. M., Kuranova, I. P., Rudenskaya, G. N., and Stepanov, V. M. (1997). Biokhimia (Biochemistry Moscow) 62, 1052–1059.

    Google Scholar 

  • Mosolova, O. V., Rudenskaya, G. N., Stepanov, V. M., Khodova, O. M., and Tsaplina, I. A. (1987). Biokhimiya (Biochemistry Moscow) 52, 414–422.

    CAS  Google Scholar 

  • Nienaber, V. L., Breddam, K., and Birktoft, J. J. (1993). Biochemistry 32, 11469–11475.

    Article  CAS  PubMed  Google Scholar 

  • Niidome, T., Yoshida, N., Ogata, F., Ito, A., and Noda, K. (1990). Biochemistry 108, 965–970.

    CAS  Google Scholar 

  • Rawlings, N. D., and Barrett, A. J. (1993). J. Biochem. 290, 205–218.

    Article  CAS  Google Scholar 

  • Rufo, G. A., Sullivan, B. J., Sloma, A., and Pero, J. (1990). J. Bacteriol. 172, 1019–1023.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ryden, A.-C., Ryden, L., and Philipson, L. (1974). Eur. J. Biochem. 44, 105–114.

    Article  CAS  PubMed  Google Scholar 

  • Sloma, A., Rudolph, C. F., Rufo, G. A., Sullivan, B. J., Theriault, K. A., Ally, D., and Pero, J. (1990). J. Bacteriol. 172, 1024–1029.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sorokin, A. V., Avakov, A. S., Bayev, V. B., and Kozlov, Yu. I. (1986). In Bacillus Molecular Genetics and Biotechnology Application (Ganesan, A. T., and Hoch, J. A., eds.), Academic Press, Orlando, Florida, pp. 447–456.

    Chapter  Google Scholar 

  • Stennicke, H. R., Birktoft, J. J., and Breddam, K. (1996). Protein Sci. 5, 2266–2275.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Svendsen, I., and Breddam, K. (1992). Eur. J. Biochem. 204, 165–171.

    Article  CAS  PubMed  Google Scholar 

  • Yoshida, N., Tsuruyama, S., Nagata, K., Hirayama, K., Noda, K., and Makisumi, S. (1988). J. Biochem. (Tokyo) 104, 451–456.

    Article  CAS  PubMed  Google Scholar 

  • Yoshikawa, K., Tsuzuki, H., Fujiwara, T., Nakamura, E., Iwamoto, H., Matsumoto, K., Shin, M., Yoshida, N., and Teraoka, H. (1992). Biochem. Biophys. Acta 221, 221–228.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Rebrikov, D.V., Akimkina, T.V., Shevelev, A.B. et al. Bacillus intermedius Glutamyl Endopeptidase. Molecular Cloning and Nucleotide Sequence of the Structural Gene. J Protein Chem 18, 21–27 (1999). https://doi.org/10.1023/A:1020639230985

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1023/A:1020639230985

Navigation