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A Self-Excising Cre Recombinase Allows Efficient Recombination of Multiple Ectopic Heterospecific Lox Sites in Transgenic Tobacco

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Abstract

To study the impact of different DNA configurations on the stability of transgene expression, a variant of the cre gene was developed. This variant allows for the highly efficient in planta removal of its own loxP-flanked coding sequence as well as other DNAs flanked by ectopic heterospecific lox sites, either lox511 or lox2272 or both, in trans. The plant intron-containing cre gene, cre INT, was configured in such a way that self-excision generated an intact hygromycin resistance selectable marker gene. In this combination, all selected transformants showed highly efficient excision. Plants obtained showed no indication of any chimerism, indicating a cell autonomous nature of the hygromycin selection during transformation and regeneration. The highly efficient concomitant removal of wildtype and heterospecific lox site-flanked DNA demonstrated that upon retransformation with the self-excising cre INT, sufficient amounts of Cre enzyme were produced prior to its removal. Plants obtained with cre INT showed much less frequently the Cre-associated phenomenon of reduced fertility than plants obtained with a continuous presence of Cre recombinase. The cre INT system has therefore advantages over systems with a continuously present Cre. The cre INT system was successfully used for removal of two chromatin boundary elements from transgene cassettes in tobacco. Analysis of plants with and without boundary elements on the same chromosomal location will contribute to a better evaluation of the role of such elements in the regulation of transgene expression in plants.

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References

  • Ahmad K and Golic KG (1996) Somatic reversion of chromosomal position effects in Drosophila melanogaster. Genetics 144: 657–670.

    Google Scholar 

  • Albert H, Dale EC, Lee E and Ow DW (1995) Site specific integration of DNA into wild-type and mutant lox sites in the plant genome. Plant J 7: 649–659.

    Google Scholar 

  • Allen GC, Spiker S and Thompson WF (2000) Use of matrix attachment regions (MARs) to minimize transgene silencing. Plant Mol Biol 43: 361–376.

    Google Scholar 

  • Bayley ChC, Morgan M, Dale EC and Ow DW (1992) Exchange of gene activity in transgenic plants catalysed by the Cre-lox sitespecific recombination system. Plant Mol Biol 18: 353–361.

    Google Scholar 

  • Bode J, Schlake T, Iber M, Schubeler D, Seibler J, Snezhkov E et al. (2000) The transgeneticist's toolbox: novel methods for the targeted modification of eukaryotic genomes. Biol Chem 381: 801–813.

    Google Scholar 

  • Bouhassira EE, Westerman K and Leboulch P (1997) Transcriptional behavior of LCR enhancer elements integrated at the same chromosomal locus by recombinase-mediated cassette exchange. Blood 90: 3332–3344.

    Google Scholar 

  • Chen J, Greenblatt IM and Dellaporta SL (1992) Molecular analysis of Ac transposition and DNA replication. Genetics 130: 665–676.

    Google Scholar 

  • Dale EC and Ow DW(1991) Gene transfer with subsequent removal of the selection gene from the host genome. Proc Natl Acad Sci USA 88: 10558–10562.

    Google Scholar 

  • Day ChD, Lee E, Kobayashi J, Holappa LD, Albert H and Ow DW (2000) Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silenced. Genes Dev 14: 2869–2880.

    Google Scholar 

  • Feng YQ, Seibler J, Alami R, Eisen A, Westerman KA, Leboulch P et al. (1999) Site-specific chromosomal integration in mammalian cells: highly efficient CRE recombinase-mediated cassette exchange. J Mol Biol 292: 779–785.

    Google Scholar 

  • Gatz C (1996) Chemically inducible promoters in transgenic plants. Curr Opin Biotechnol 7, 168–172.

    Google Scholar 

  • Gleave AP, Mitra DS, Mudge SR and Morris BAM (1999) Selectable marker-free transgenic plants without sexual crossing: transient expression of cre recombinase and use of a conditional lethal dominant gene. Plant Mol Biol 40: 223–235.

    Google Scholar 

  • Hoess RH and Abremski K (1985) Mechanism of strand cleavage and exchange in the Cre-lox site-specific recombination system. J Mol Biol 181: 351–362.

    Google Scholar 

  • Hoess RH, Wierzbicki A and Abremski K (1986) The role of the loxP spacer region in P1 site-specific recombination. Nucl Acids Res 14: 2287–2300.

    Google Scholar 

  • Hoff T, Schnorr KM and Mundy J (2001) A recombinase-mediated transcriptional induction system in transgenic plants. Plant Mol Biol 45: 41–49.

    Google Scholar 

  • Jiang R and Gridley T (1997) Gene targeting: things go better with Cre. Curr Biol 7: R321–R323.

    Google Scholar 

  • Kang H-G, Fang Y and Singh KB (1999) A glucocorticoid-inducible transcription system causes severe growth defects in Arabidopsis and induces defense-related genes. Plant J 20: 127–133.

    Google Scholar 

  • Koshinsky HA, Lee E and Ow DW (2000) Cre-lox site-specific recombination between Arabidopsis and tobacco chromosomes. Plant J 23: 715–722.

    Google Scholar 

  • Lee G and Saito I: (1998) Role of nucleotide sequences of loxP spacer region in Cre-mediated recombination. Gene 216: 55–65.

    Google Scholar 

  • Metzger D and Feil R: (1999) Engineering the mouse genome by site-specific recombination. Curr Opin Biotechnol 10: 470–476.

    Google Scholar 

  • Mlynárová L, Loonen A, Heldens J, Jansen RC, Keizer P, Stiekema WJ et al. (1994) Reduced position effect in mature transgenic plants conferred by the chicken lysozyme matrix-associated region. Plant Cell 6: 417–426.

    Google Scholar 

  • Mlynárová L, Jansen RC, Conner AJ, Stiekema WJ and Nap JP (1995) The MAR-mediated reduction in position effect can be uncoupled from copy number-dependent expression in transgenic plants. Plant Cell 7: 599–609.

    Google Scholar 

  • Nagy A (2000) Cre recombinase: the universal reagent for genome tailoring. Genesis 26: 99–109.

    Google Scholar 

  • Odell J, Caimi P and Russell S (1990) Site-directed recombination in the genome of transgenic tobacco. Mol Gen Genet 223: 369–378.

    Google Scholar 

  • Odell JT, Hoopes JL and Vermerris W (1994) Seed-specific gene activation mediated by the Cre/lox site-specific recombination system. Plant Physiol 106: 447–458.

    Google Scholar 

  • Ohta S, Mita S, Hattori T and Nakamura K (1990) Construction and expression in tobacco of a β-glucuronidase (GUS) reporter gene containing an intron within the coding sequence. Plant Cell Physiol 31: 805–813.

    Google Scholar 

  • Ow DW (1996) Recombinase-directed chromosome engineering in plants. Curr Opin Biotechnol 7: 181–186.

    Google Scholar 

  • Que Q, Wang H-Y and Jorgensen RA (1998) Distinct patterns of pigment suppression are produced by allelic sense and antisense chalcone synthase transgenes in petunia flowers. Plant J 13: 401–409.

    Google Scholar 

  • Phi-Van L and Strätling, WH (1988) The matrix attachment regions of the chicken lysozyme gene co-map with the boundaries of the chromatin domain. EMBO J 7: 655–664.

    Google Scholar 

  • Russell SH, Hoopes JL and Odell JT (1992) Directed excision of a transgene from the plant genome. Mol Gen Genet 234: 49–59.

    Google Scholar 

  • Sambrook J, Fritsch EF and Maniatis T (1989) Molecular Cloning. A Laboratory Manual. 2nd edn, Cold Spring Harbor Laboratory Press, Cold Spring Harbor.

    Google Scholar 

  • Sauer B (1987) Functional expression of the cre-lox site specific recombination system in the yeast Saccharomyces cerevisiae. J Mol Cell Biol 7: 2087–2096.

    Google Scholar 

  • Sauer B (1994) Site-specific recombination:developments and applications. Curr Opin Biotechnol 5: 521–527.

    Google Scholar 

  • Sauer B and Henderson N (1989) Cre-stimulated recombination at loxP sites placed into the genome of mammalian cells. Nucl Acids Res 17: 147–161.

    Google Scholar 

  • Schöffl F, Diedring V, Kliem M, Rieping M, Schröder G and Severin K (1992) The heat shock response in transgenic plants: the use of chimaeric heat shock genes. In:Wray JL (ed.), Inducible Plant Proteins. Society for Experimental Biology Seminars Series 49, Cambridge University Press, Cambridge, pp. 247–266.

    Google Scholar 

  • Schmidt EE, Taylor DS, Prigge JR, Barnett S and Capecchi MR (2000) Illegitimate Cre-dependent chromosome rearrangements in transgenic mouse spermatids. Proc Natl Acad Sci USA 97: 13702–13707.

    Google Scholar 

  • Schmitz SA, Ho W, Baker S, Mercer L and Hershey HP (1991) Site directed mutagenesis of the inducible region of a chemically regulated corn promoter. In: Hallick RB (ed.), Third International Congress of the International Society for Plant Molecular Biology. Abstr #408.

  • Siegal ML and Hartl DL (1996) Transgene coplacement and high efficiency site-specific recombination with the Cre/loxP system in Drosophila. Genetics 144: 715–726.

    Google Scholar 

  • Srivastava V, Anderson OD and Ow DW (1999) Single-copy transgenic wheat generated through the resolution of complex integration patterns. Proc Natl Acad Sci USA 96: 11117–11121.

    Google Scholar 

  • Stuurman J, De Vroomen MJ, Nijkamp HJJ and Van Haaren MJJ (1996) Single-site-specific manipulation of tomato chromosomes in vitro and in vivo using Cre-lox site-specific recombination. Plant Mol Biol 32: 901–913.

    Google Scholar 

  • Sugita K, Matsunaga E and Ebinuma H (1999) Effective selection system for generating marker-free transgenic plants independent of sexual crossing. Plant Cell Rep 18: 941–947.

    Google Scholar 

  • Utomo ARH, Nikitin A Yu and Lee W-H (1999) Temporal, spatial, and cell type-specific control of Cre-mediated DNA recombination in transgenic mice. Nature Biotechnol 17: 1091–1096.

    Google Scholar 

  • van Engelen FA, Molthoff JW, Conner AJ, Nap JP, Pereira A and Stiekema WJ (1995) pBINPLUS: an improved plant transformation vector based on pBIN19. Transgenic Res 4: 288–290.

    Google Scholar 

  • van Haaren MJJ and Ow DW (1993) Prospects of applying a combination of DNA transposition and site-specific recombination in plants: a strategy for gene identification and cloning. Plant Mol Biol 23: 525–533.

    Google Scholar 

  • Vancanneyt G, Schmidt R, O'Connor-Sánchez, A, Willmitzer L and Rocha-Sosa M (1990) Construction of an intron-containing marker gene: splicing of the intron in transgenic plants and its use in monitoring early events in Agrobacterium-mediated plant transformation. Mol Gen Genet 220: 245–250.

    Google Scholar 

  • Vergunst AC, Jansen LET and Hooykaas PJJ (1998a) Site-specific integration of Agrobacterium T-DNA in Arabidopsis thaliana mediated by Cre recombinase. Nucl Acids Res 26: 2729–2734.

    Google Scholar 

  • Vergunst AC and Hooykaas PJJ (1998b) Cre/lox-mediated sitespecific integration of Agrobacterium T-DNA in Arabidopsis thaliana by transient expression of cre. Plant Mol Biol 38: 393–406.

    Google Scholar 

  • Vergunst AC, Schrammeijer B, den Dulk-Ras A, de Vlaam CMT, Regensburg-Tuink TJG and Hooykaas PJJ (2000) VirB/D4-dependent protein translocation from Agrobacterium into plant cells. Science 290: 979–982.

    Google Scholar 

  • Zuo J, Niu Q-W, Møller SG and Chua N-H (2001) Chemicalregulated, site-specific DNA excision in transgenic plants. Nature Biotechnol 19: 157–161.

    Google Scholar 

Download references

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Correspondence to Jan-Peter Nap.

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Mlynárová, L., Nap, JP. A Self-Excising Cre Recombinase Allows Efficient Recombination of Multiple Ectopic Heterospecific Lox Sites in Transgenic Tobacco. Transgenic Res 12, 45–57 (2003). https://doi.org/10.1023/A:1022112221427

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