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Assignment validation software suite for the evaluation and presentation of protein resonance assignment data

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Abstract

We present a set of utilities and graphical user interface (GUI) tools for evaluating the quality of protein resonance assignments. The Assignment Validation Software (AVS) suite, together with new GUI features in the AutoAssign software package, provides a set of reports and graphs for validating protein resonance assignment data before its use in structure analysis and/or submission to the BioMagResBank (BMRB). Input includes a listing of resonance assignments and a summary of sequential connectivity data (i.e. triple resonance, NOE, or other data) used in deriving the assignments. These tools are useful for evaluating the accuracy of protein resonance assignments determined by either automated or manual methods.

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Authors and Affiliations

  1. Department of Molecular Biology and Biochemistry, Center for Advanced Biotechnology and Medicine, Rutgers University, Piscataway, NJ, 08854, U.S.A.

    Hunter N.B. Moseley, Gurmukh Sahota & Gaetano T. Montelione

  2. Department of Biochemistry and Molecular Biology, Robert Wood Johnson Medical School, Piscataway, NJ, 08854, U.S.A.

    Gaetano T. Montelione

Authors
  1. Hunter N.B. Moseley
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  2. Gurmukh Sahota
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  3. Gaetano T. Montelione
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Moseley, H.N., Sahota, G. & Montelione, G.T. Assignment validation software suite for the evaluation and presentation of protein resonance assignment data. J Biomol NMR 28, 341–355 (2004). https://doi.org/10.1023/B:JNMR.0000015420.44364.06

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  • DOI: https://doi.org/10.1023/B:JNMR.0000015420.44364.06

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