Web Release Date: March 13,
Thermodynamics of Calmodulin Trapping by Ca2+/Calmodulin-Dependent Protein Kinase II: Subpicomolar Kd Determined Using Competition Titration Calorimetry

and
Departments of Biochemical Pharmacology and Biophysics and Crystallography, Roche Palo Alto LLC, 3431 Hillview Avenue, Palo Alto, California 94304
Received January 3, 2007
Revised Manuscript Received February 2, 2007

Abstract:
Calmodulin (CaM) trapping by Ca2+/calmodulin-dependent protein kinase II (CaMKII) is a
phenomenon whereby the affinity of CaM for CaMKII increases >1000-fold following CaMKII
autophosphorylation. The molecular basis of this effect is not entirely understood. Binding of CaM to the
phosphorylated and the unphosphorylated states of CaMKII is well mimicked by the interaction of CaM
with two different length peptides taken from the CaM-binding region of CaMKII, peptides we refer to
as the long and intermediate peptides. To better understand the conformational change accompanying
CaM trapping, we have used isothermal titration calorimetry (ITC) to compare the binding thermodynamics
of CaM to these peptides as well as to a shorter CaMKII-based peptide. Calorimetric analysis revealed
that the enthalpy, rather than the entropy, distinguished binding of these three peptides. Furthermore, the
heat capacity change was found to be similar for the long and intermediate peptides but smaller in magnitude
for the short peptide. Direct titration of CaM with peptide provided the Kd value for the short peptide (Kd
= 5.9 ± 2.4
M), but a novel, two-phased competitive binding strategy was necessary to ascertain the
affinities of the intermediate (Kd = 0.17 ± 0.06 nM) and long (Kd = 0.07 ± 0.04 pM) peptides. To our
knowledge, the Kd for the long peptide is the most potent measured to date using ITC. Together, the
findings reported here support a model whereby the final conformational change accompanying CaM
trapping buries little additional surface area but does involve formation of new hydrogen bonds and van
der Waals contacts that contribute to formation of the high-affinity, CaM-trapped state.
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