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Genomics
Volume 83, Issue 3, March 2004, Pages 493-501
 
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doi:10.1016/j.ygeno.2003.08.017    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2003 Elsevier Inc. All rights reserved.

Inversion, duplication, and changes in gene context are associated with human chromosome 18 evolution*1

Briana K. Dennehey, Diane G. Gutches1, Edwin H. McConkey and Kenneth S. KrauterCorresponding Author Contact Information, E-mail The Corresponding Author

Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USA

Received 1 July 2003; 
accepted 19 August 2003. ;
Available online 4 October 2003.

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Abstract

Human chromosome 18 differs from its homologues in the great apes by a pericentric inversion. We have identified a chimpanzee bacterial artificial chromosome that spans a region where a break is likely to have occurred in a human progenitor and have characterized the corresponding regions in both chimpanzees and humans. Interspecies sequence comparisons indicate that the ancestral break occurred between the genes ROCK1 and USP14. In humans, the inversion places ROCK1 near centromeric heterochromatin and USP14 adjacent to highly repetitive subtelomeric repeats. In addition, we provide evidence for a human segmental duplication that may have provided a mechanism for the inversion.

Author Keywords: Evolution; Cytogenetics; Inversion; Duplication; Chimpanzee

Article Outline

• Results
• Identification of a centromere-proximal bacterial artificial chromosome (BAC)
• Identification of a breakpoint-spanning BAC
• Identification of a segmental duplication within HSA18
• Human–chimpanzee sequence comparisons
• The structure of human chromosome 18 in inverted and breakpoint regions
• Discussion
• Possible role of a segmental duplication in an inversion mechanism
• Possible significance of human–chimpanzee sequence differences
• Materials and methods
• Microbiological techniques and nucleic acid manipulations
• Fluorescence in situ hybridizations
• Hybridization with BACPAC Resources filter library
• BAC minilibrary construction
• Sequencing
• Sequence comparisons
• Syntenic regions in mouse and rat
• Radiation hybrid mapping
• Acknowledgements
• References






Genomics
Volume 83, Issue 3, March 2004, Pages 493-501
 
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