Data and code availability
The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium (http://proteomecentral.proteomexchange.org) via the PRIDE partner repository under the accession number PRIDE: PXD027597.62 This data will be publicly available at the date of publication. Accession numbers are listed in the key resources table. Clinical data is provided in supplementary tables.
The pipeline for the analysis is available on GitHub https://github.com/klevdiamanti/multitissue_ms_proteomics. A web-based tool that allows visualization and exploration for levels of proteins across tissues is available on http://bioinf.icm.uu.se:3838/multitissue_ms_proteomics/. Any additional information required to reanalyze the data reported in this paper is available from the lead contact upon request.