doi:10.1016/j.virol.2007.10.005
Copyright © 2007 Elsevier Inc. All rights reserved.
Rapid Communication
Molecular epidemiology of rabies virus isolated from different sources during a bat-transmitted human outbreak occurring in Augusto Correa municipality, Brazilian Amazon
Taciana Fernandes Souza Barbosaa, Daniele Barbosa de Almeida Medeirosa, Elizabeth Salbe Travassos da Rosaa, Lívia Medeiros Neves Casseba, Rita Medeirosb, Armando de Souza Pereiraa, Antonio Carlos Rosário Vallinotoc, Marcelo Vallinotod, Alberto Lopes Begote, Reynaldo José da Silva Limae, Pedro Fernando da Costa Vasconcelosa and Márcio RobertoTeixeira Nunesa,
, 
aDepartamento de Arbovirologia e Febres Hemorrágicas, Instituto Evandro Chagas, Belém, Brazil
bNúcleo de Medicina Tropical, Hospital Universitário João de Barros Barreto, Universidade Federal do Pará, Belém, Brazil
cLaboratório de Virologia, Departamento de Patologia, Centro de Ciências Biológicas, Universidade Federal do Pará, Belém, Brazil
dLaboratório de Genética e Biologia Molecular, Universidade Federal do Pará, Campus Bragança, Brazil
eSecretaria de Saúde Pública do Estado do Pará, Belém, Brazil
Received 18 June 2007;
revised 14 August 2007;
accepted 5 October 2007.
Available online 8 November 2007.
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Abstract
We genetically characterize rabies virus (RABV) strains isolated from human cases, domestic and wild animals during a human outbreak of bat-transmitted rabies in Augusto Correa municipality, Pará state, Brazilian Amazon in 2005. Partial nucleotide sequences of the N gene (491 bp) were obtained for all strains, and phylogenetic analysis grouped these into two major clades (Pará and Central-Southeast) and identified them as bat-related viruses genotype I, Desmodus rotundus antigenic variant 3 (AgV3). A molecular clock was used to estimate the time of emergence for each RABV isolate. The molecular data from this study suggest the association of vampire bats with human and domestic animal cases reported in the outbreak, the circulation of at least two predominant lineages in the Pará state, and also a geographic association to lineages dispersion.
Keywords: Rabies virus; Hematophagous bat; Rabies outbreak; Molecular epidemiology; Augusto Correa municipality
Fig. 1. Phylogeny of partial nucleotide sequence of RABV N gene isolated during the Augusto Correa outbreak occurred in 2005. Bayesian method and bootstrap analysis were used for three constructions. Bootstrap percentage values for ML method and Bayesian values (inside parenthesis) are placed over each main group node. Arrows are indicating the exact position of bootstrap values. Number under the scale bar corresponds to 3% nucleotide sequence divergence.
Fig. 2. Schematic rabies virus tree rooted with AVO1 and CVS strains indicating the starlike evolution. Divergence times (upper and lower values) are shown over all nodes of the tree.
Fig. 3. Geographic position of the places where the RABV strains used for phylogenetic analysis was isolated. Black dot corresponds to Augusto Correa Municipality, Pará state [PA]. Triangles represent other municipalities of different Brazilian states which are highlighted in light gray (TO: Tocantins; MT: Mato Grosso; GO: Goias; MG: Minas Gerais; SP: São Paulo). Areas highlighted in dark gray represent the Marajo region in which Portel municipality is included. Dashed areas correspond to the northeast region of Pará state including Augusto Correa and Viseu municipalities. ?: unknown municipalities.
Table 1.
Analysis of maximum-likelihood ratio for the molecular clock hypothesis

ML = maximum-likelihood method; MLK = maximum-likelihood method enforcing a molecular clock.
Table 2.
Rabies virus strains used for genetic characterization according with its host association, geographic origin, and year of isolation
