Copyright © 2007 Elsevier Ltd All rights reserved.
Received 14 December 2005;
References and further reading may be available for this article. To view references and further reading you must purchase this article.
Abstract
In this paper we study some combinatorial properties of a class of languages that represent sets of words occurring in a text S up to some errors. More precisely, we consider sets of words that occur in a text S with k mismatches in any window of size r. The study of this class of languages mainly focuses both on a parameter, called repetition index, and on the set of the minimal forbidden words of the language of factors of S with errors. The repetition index of a string S is defined as the smallest integer such that all strings of this length occur at most in a unique position of the text S up to errors. We prove that there is a strong relation between the repetition index of S and the maximal length of the minimal forbidden words of the language of factors of S with errors. Moreover, the repetition index plays an important role in the construction of an indexing data structure. More precisely, given a text S over a fixed alphabet, we build a data structure for approximate string matching having average size O(|S|
logk+1|S|) and answering queries in time O(|x|+|occ(x)|) for any word x, where occ is the list of all occurrences of x in S up to errors.
Keywords: Combinatorics on words; Formal languages; Approximate string matching; Indexing






E-mail Article
Add to my Quick Links

Cited By in Scopus (0)

) space, where 





