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Theoretical Computer Science
Volume 372, Issue 1, 6 March 2007, Pages 115-121
 
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doi:10.1016/j.tcs.2006.12.012    How to Cite or Link Using DOI (Opens New Window)
Copyright © 2006 Elsevier Ltd All rights reserved.

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A simple storage scheme for strings achieving entropy boundsstar, open

Paolo FerraginaCorresponding Author Contact Information, a, E-mail The Corresponding Author and Rossano Venturinia, E-mail The Corresponding Author

aDipartimento di Informatica, University of Pisa, Italy

Received 3 July 2006; 
revised 13 December 2006; 
accepted 14 December 2006. 
Communicated by A. Apostolico. 
Available online 11 January 2007.

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Abstract

We propose a storage scheme for a string S[1,n], drawn from an alphabet Σ, that requires space close to the k-th order empirical entropy of S, and allows one to retrieve any substring of S of length in optimal View the MathML source time. This matches the best known bounds [R. González, G. Navarro, Statistical encoding of succinct data structures, in: Procs CPM, in: LNCS, vol. 4009, 2006, pp. 295–306; K. Sadakane, R. Grossi, Squeezing succinct data structures into entropy bounds, in: Procs ACM-SIAM SODA, 2006, pp. 1230–1239], via the use of binary encodings and tables only. We also apply our storage scheme to the Burrows–Wheeler Transform [M. Burrows, D. Wheeler, A block sorting lossless data compression algorithm, Technical Report 124, Digital Equipment Corporation, 1994], and achieve a space bound which depends on both the k-th order entropy of S and the k-th order entropy of its BW-transformed string View the MathML source.

Keywords: Data structures for strings; Data compression


 
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